1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acttgttggaacaattcatttaaattttctaacatatagagaaaatggagcaaatcgtcctttcttcttatcatgttctttttattgttatgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATCTCAAAGGTTACCTTCAAACTGCTTACATCCATCCAGTTTTTAAAAGCG
species | Vitis vinifera |
transcript | Vv10s0116g00940.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATEST: gi|34548192|gb|CF516424.1|CF516424
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATEST: gi|110363926|gb|EC927558.1|EC927558
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATEST: gi|110703649|gb|EE080681.1|EE080681
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATEST: gi|30251320|gb|CB969053.1|CB969053
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATEST: gi|351028550|gb|FQ444831.1|FQ444831
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCACTAGATATCCACTGCAN GAAGCAAAGATGAAGEST: gi|110413058|gb|EC978829.1|EC978829
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAG
EST: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAG GAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
genomic: ATTACTGTAAAGGCCGTTTTGAACCTGCATTCATTAGATATCCACTGCAGgtttgttttc ... tgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAAT
tggagcaaatcgtcctttcttcttatcatgttctttttattgttatgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATCTCAAAGGTTACCTTCAAACTGCTTACATCCATCCAGTTTTTAAAAGCG
ttctttttattgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgttggaacaattcatttaaattttctaacatatagagaaaatggagcaaatcgtcctttcttcttatcatgttctttttattgttatgggttttagGAAGCAAAGATGAAGGATACCCTTGAACGTGCAAGGGAACCACACCTCAATCTCAAAGGTTACCTTCAAACTGCTTACATCCATCCAGTTTTTAAAAGCG
- - - -ggaacaa
- - - - - - - - - - - - - - - - - - - -agaaaat