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...ggaaaataaactttcatgtatctaaatgggattaatttagatgaagttggagaactccactgatttaattgttccttttttccttctcttgttgttgcagTGAGAATAAAAGAAGGGAGTAGAAGAGAAAGAAAAAAGGGTGGGGGTTCATCCTGGGATTTGGAACAGAGAGAAGAAGTCAAGAACGCACCTTGTCTTGA
species | Vitis vinifera |
transcript | Vv10s0116g00680.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGGCAGCAGTATCATGTGAGAACACATGATACAGAAATATTTAAACATG TGAGAATAAAAGAAGGGAGTAGAAGAGAAAGAAAAAAGGGTGGGGGTTCATEST: gi|77587369|gb|DV222828.1|DV222828
genomic: AAGGCAGCAGTATCATGTGAGAACACATGATACAGAAATATTTAAACATGgtgagcaaat ... gttgttgcagTGAGAATAAAAGAAGGGAGTAGAAGAGAAAGAAAAAAGGGTGGGGGTTCAT
EST: AAGGCAGCAGTATCATGTGAGAACACAT--TACAGAAATATTTAAACATG TGAGAATAAAAGAAGGGAGTAGAAGAGAAA
genomic: AAGGCAGCAGTATCATGTGAGAACACATGATACAGAAATATTTAAACATGgtgagcaaat ... gttgttgcagTGAGAATAAAAGAAGGGAGTAGAAGAGAAA
gttggagaactccactgatttaattgttccttttttccttctcttgttgttgcagTGAGAATAAAAGAAGGGAGTAGAAGAGAAAGAAAAAAGGGTGGGGGTTCATCCTGGGATTTGGAACAGAGAGAAGAAGTCAAGAACGCACCTTGTCTTGA
tttaattgttcctttt CT-rich tract
atttaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaataaactttcatgtatctaaatgggattaatttagatgaagttggagaactccactgatttaattgttccttttttccttctcttgttgttgcagTGAGAATAAAAGAAGGGAGTAGAAGAGAAAGAAAAAAGGGTGGGGGTTCATCCTGGGATTTGGAACAGAGAGAAGAAGTCAAGAACGCACCTTGTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- aaaataa
- - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -actccac