Sequence
atgc intronic sequence ATGC exonic sequence...acttactctttaccttctcattacattaagatgttctttgccaatgataaacttgatataaaaatattcatgttacttctatttttgtcctgatttccagCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G00220.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------------act-tactct-ttaccttctcattacattaagatgttctttgccaatgataaact-tgatataaaaatattcatgttacttctatttttgtcctgatttccagCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTC
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gtatcctccttttgtcttttcttccttttcactggtgtattgagcctcaggctgtcatcatcatgtttgcttgttagttttcacagtgctctgttatcatccaatt-tactgacaaattattgtttaatgagatcttgtattatcacagcattaattgaaatctgtttcctgtttt---ctccagCACCACTGCATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATGCAATACCATCAACCAATTATCATTCGACAACTTCATTTGTTGACAATCA
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA0048S00320.1 (Glycine max), 3'ss of exon 9
act-tactctttaccttctcattacattaagatgttctttgccaatgataaacttga--tataaaaatattcatgttacttctatttttgtcctgatttccagCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTC
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acagtgctctgttcttatccaatttactgacaaattattgtttaatgaggatcttgtattatcacagcattaattgaaatctgtttcttgtttt---ctccagCACCATTACATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATGCAATATCATCTACCAATTATCAATCAACTACTTCATTTGTTGACAATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gataaacttgatataaaaatattcatgttacttctatttttgtcctgatttccagCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTC
tcctgat putative branch site (score: 3)
cttctatttttgtcct CT-rich tract
ttgatataaaaatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttactctttaccttctcattacattaagatgttctttgccaatgataaacttgatataaaaatattcatgttacttctatttttgtcctgatttccagCTCCACTGCATGGGTTTGCTTTCTGGTTTGACGTTGAATTCAATGGGCCTGCAATTTTTCCTACCAGTACTGATTCTCCATCCTTGTTTATTGGATCTTC
- - - - - - ccttctc
- - - - - - - - - - - - - - - - - - -ttgccaa
- - - - - - - - - - - - - - - - - - - - - - -gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt