Sequence
atgc intronic sequence ATGC exonic sequence...ccatctagacatacagagcatgcatatctttcttgtaaaaacaggatttttctaatgctttcaagtaatttgcactgagagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G09050.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------------------------------ccatctagacatacagagcatgcatatctttcttgtaaaaacaggatttttctaatgctttcaagtaatttgcactgagagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
| || || || | | || || ||| || | |||| | || | ||| | | ||| | || | | ||||| |||||||| |||| || || || ||||||| | ||| || |||||||| ||||||| |||||||| ||||||||||||||||||| |||| ||||| |||||
gtatgttgtttacaaaatctaaccccactacAGTTGCCAAAACTGGTCTACACGGGAACATTGATAGCTGTTTCTTTTATGTAGATTTTGCAACTATAAGCTATTTACTT-TAAACAATGTGT-TAGCTTATTTTTTAAAATATATGCTTGAGTTTTGTTTTATTCATGGCAAACTAAAAG--TGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
upper sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G26100.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------ccatctagacatacagagcatgcatatctttcttgtaaaaac-----aggatttttctaa------tgctttcaagtaatttg------cactga--gagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
|| |||| | | || |||||| || || || ||||||| | | ||| |||||| ||| | | | | | ||||| |||||||| |||| || || || ||||||||| ||| || |||||||| ||||| | ||||| || ||||||||||||||||||| |||| ||||| |||||
gtaggttgtttacaaaatctagccgtaatacAGTTGCCAAAATAGGTCTACACAGGAACATTGATAGTTGCTTCTTTTATGTAGATTTTTCAACTATAAGCTATTTTCTTTAAACAATGTGTTAGCTTTTTTCTTAAACATATACTTGAGTTTAATTTTACTCCTCACAAACTAAAAGTGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAGACAGCTTTAAGAAACACGAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32271159|gb|CD720318.1|CD720318EST: ACGGTTAATGGCACATCTTGAAGATAAAGCAGAAGTGGTTCCAGAAGAAG AGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGA
genomic: ACGGTTAATGGCACATCTTGAAGATAAAGCAGAAGTGGTTCCAGAAGAAGgtatgaactt ... tggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttctaatgctttcaagtaatttgcactgagagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
ttctaat putative branch site (score: 2)
attagttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccatctagacatacagagcatgcatatctttcttgtaaaaacaggatttttctaatgctttcaagtaatttgcactgagagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
ccatcta
- - - - acataca
- - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc