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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttaagtaaacggtactaataaatactcaaggtactccaacttatagactaattgatagttctgtacttgtttatttcagTGGTTCAGTGGGTGCAAGGTTATCCACAGATGCTTCAACAGTCCGCAGTCTAGTGGGTGATACATTAGCCCTGGTTGTCCAGAACCTGGTGACAGTCGCA

Basic information

species Vitis vinifera
transcript Vv10s0003g02570.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G09680.1 (Glycine max), 3'ss of exon 8
----gtttgttaagtaaacggtactaataaatactcaaggtactccaacttatagactaattgatagttctgtacttgtttatttcagTGGTTCAGTGGGTGCAAGGTTATCCACAGATGCTTCAACAGTCCGCAGTCTAGTGGGTGATACATTAGCCCTGGTTGTCCAGAACCTGGTGACAGTCGCA
    || ||||||    ||  |   | ||  || |  |  | || | ||| ||  | |  || |  |   || |  | |||    ||||||| |||| |||||||||||||| |||||||||||||||||    |||||||||||||| ||||| || ||  |||| || ||| |    ||| || ||
gtacgtatgttaacatgacattttaattatgtaatataattccttctactcatcaaat--tttaaggaaatgaatctcttt---ccagTGGTGCAGTTGGTGCAAGGTTATCTACAGATGCTTCAACAGTGAAAAGTCTAGTGGGTGACACATTGGCTCTCATTGTGCAAAACATATCAACAATCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaaggtactccaacttatagactaattgatagttctgtacttgtttatttcagTGGTTCAGTGGGTGCAAGGTTATCCACAGATGCTTCAACAGTCCGCAGTCTAGTGGGTGATACATTAGCCCTGGTTGTCCAGAACCTGGTGACAGTCGCA
                                             tttatttc  CT-rich tract
                                          ttgtttattt  TA-rich tract