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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattctcgtttgttgtcctttctttttctcactccatttaggaatggctatacttgtagctctaactggcagttctctgtagGTTTTCTTTGCTTTGACGATTTCTGCCATTGGAATTTCCCAAACTAGTGCCATGGCTCCAGACACCAACAAAGCTAAAGATTCAACTGCTACAATATTTC

Basic information

species Vitis vinifera
transcript Vv10s0003g02540.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02540.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G18050.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaaaattctcgtttgttgtcctttctttttctcactccatttaggaatggctatactt-gtagctctaactggcagttctctgtagGTTTTCTTTGCTTTGACGATTTCTGCCATTGGAATTTCCCAAACTAGTGCCATGGCTCCAGACACCAACAAAGCTAAAGATTCAACTGCTACAATATTTC
           ||  | ||       ||| ||    |  ||| ||   ||| |    || ||     | |  |    || | |  ||||||||||||| |||||||||   || |||||| |||| ||||| ||||| ||||| || ||  | |||||||||||||| ||  | ||| | || ||  
-----------gtaagatgagaaacatttctcg-gtttaattaagatctggttcggtttagtgatcttgagagtgtattttttacagGTTTTCTTTGCATTGACGATTATGGCGATTGGAGTTTCTCAAACGAGTGCTATGGCACCTGATTCAAACAAAGCTAAAGACTCTGCAGCTTCGATTTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcactccatttaggaatggctatacttgtagctctaactggcagttctctgtagGTTTTCTTTGCTTTGACGATTTCTGCCATTGGAATTTCCCAAACTAGTGCCATGGCTCCAGACACCAACAAAGCTAAAGATTCAACTGCTACAATATTTC
                                ctctaac  putative branch site (score: 2)
                                             ttctctgt  putative PPT
                     tatactt  TA-rich tract