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...tgtttagtaactgagagtatgcatctctaagttcacagggcctttgtttctcattttctttatgggtcataaaaattcaagtgttagttgaattgtgcagGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGATCTGAAGGGATGCTTCGACACAGAAGAGCTTGAAAAAGCTGTAGGGCTTG
species | Vitis vinifera |
transcript | Vv10s0003g01490.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATTAGATGCTGGAAATGGTCAGGTTCAGAAGGGTATGATTCTTGACTGG GTTAGAACCCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGATEST: gi|110418463|gb|EC984620.1|EC984620
genomic: CATTAGATGCTAGAAATGGTCAGGTTCAGAAGGGTATGATTCTTGACTGGgtaagtagtt ... aattgtgcagGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGAT
EST: CATTAGATGCTGGAAATGGTCAGGTTCAGAAGGGTATGATTCTTGACTGG GTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGAT
genomic: CATTAGATGCTAGAAATGGTCAGGTTCAGAAGGGTATGATTCTTGACTGGgtaagtagtt ... aattgtgcagGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGAT
gtttctcattttctttatgggtcataaaaattcaagtgttagttgaattgtgcagGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGATCTGAAGGGATGCTTCGACACAGAAGAGCTTGAAAAAGCTGTAGGGCTTG
tcataaaaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttagtaactgagagtatgcatctctaagttcacagggcctttgtttctcattttctttatgggtcataaaaattcaagtgttagttgaattgtgcagGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGATCTGAAGGGATGCTTCGACACAGAAGAGCTTGAAAAAGCTGTAGGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgt