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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtttctttaaatcctaagtaattattagtagtactattttgaaatatacattgtccatttccatcctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 10
tagtttctttaaatcctaagtaattatt----agtagtactattttgaaatatacattgtccatttccatcctctttga-ctaagctatatttttgtcat-tgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
    || |||||| | || |   |   |    |  ||||  || |  |||    |||  |  |    |||  ||   || || |||  |   ||  | || ||||||| || |||||||||||| | |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||| |
--aattgtttaaagcttatgctttagctggaaaacagtataatctctaaagcagcatgctgga----cattttcaaagagcttagcatttggttgattatatgcagCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 3'ss of exon 10
tagtttctttaaatcctaagtaattattagtagtactattttga--aatatacattgtccatttccatcctctttgactaagctatatttttgtcatt--gcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
   |    || | || | | | | | | | | | | ||    ||  |  |   | | |  ||||   | |   |   || |   || |   | || ||  |||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||| ||||||| || |||||||| ||||| || ||||| || || || |
---tcatgtttagtcgttattcagtgt-aattgcaatagccagatgacaacttaatattgattttttttccgatgtgcttattcatttgaatatctttatgcagCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 10
--------------------------------------------------------tagtttctttaa-atc-ctaagtaattattagtagtactattttgaaatatacattgtcc---atttccatc----ctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                                        ||  || ||| | ||| |    | ||| |    | |   |||    |||     || |     | | | | |    |  |||||  |   | | ||||||| || |||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | || || || |||||||
gttagtgtggttgcatttttttttttccactttctgtattccaactaatttagtattacattatttgacatcaccttatgattctcctgaatttaattaatcaatgagtgttctatagaaatactagcacagcaatttgaaaagagtctttttttgttat-gcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G09090.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------tagtttctttaaatcctaagtaattattagtagtactattttgaaatatacattgtccatttccatcctc-------tttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                                      ||| | || | | ||||  ||||| |    | |   |||    |||  |  || |  |          |       |||||  |   | ||||| ||| || |||||| ||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||| || ||||| || || || || ||||
gttagtgttttttttttttttttccactttctgtattccaactaatttagtatcagtattttcatacccta--taattctcctgaatttgattaatcaatgaatgttctatagaaaagctagcacggaaatttgagaagaatctatttgtgttat-gcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCCATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G06760.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------------tagtttctttaaatcctaagtaattattagtagtactattttgaaatatacattgtccatttccatcctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                                                  ||  | | |   |||| | |  | ||||        || |||   | || |    | |   |     | || |||||   ||| ||||| |    |||||| ||||||||||||||||||||||||||||| || || |||||||| || ||||||||||||||||| ||||| || ||||| || || || || ||||
gtaagtgtggttggctttaccctgctttctgtattcaaactaatttagtattgcattatgtatatcagcctgtatttctcctgaatt-tgattaaccaatgaatgttgctctttagaaaaactagcacagaaattttagactagtttatttttttat----gcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCCAACGCTCGCCTGCCAAATGGTCGCCCATTTCCCCCTCTATTTAACTTCAAACAGG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G29200.1 (Glycine max), 3'ss of exon 9
--------------------------------------------------tagt--ttctttaa-atcctaa-gtaattattagtagtactattttgaaatatacattgtccattt---ccatcctctttgactaagctatatttttgtcatt--gcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                                  || |  ||||| ||  | | |   || || ||   | |  |||     | |     || |  || |   | | | |    |  | ||    |||||  |  ||  ||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| | | ||||| ||||||||||||| || ||||| ||||| ||||| || |
gtgagtgtgattactgcaattttgatttatttgtctgtgtgcaaatcatttaatctttcttcaacgtgccagtatatttgttctgaatgttatcagttagtgactgttatatatattaactagcatagcagtttgaggaggattttctttgttatgcagCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTTAAACAAG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G06850.1 (Glycine max), 3'ss of exon 10
----------------------------------------tagtttctttaaatcctaagta-attattagtagtactattttgaaatatacattgtccatttcca--tcctctttgac-----taagctatatttttgtcat-tgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                        || |||  |       || ||| || ||      |          |||  |  |||| | ||   |   | |  |  ||     ||  ||| ||| || || | ||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| ||| ||||||||||||||||||| || ||||| || || || || ||||
gtaagtgtggttggctttaccccgctttctgtgttccgactaatttagtattgcattatgtatatcatcctgtatttctcccgccaatggatgttgttctttagaaaaacttgctcaacaattttagactaaattattttcctatgcagCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAACCTAATGCTCGCTTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAACAGG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G12370.1 (Glycine max), 3'ss of exon 10
--------------------------------------------------tagtttctttaaatcctaagtaat-tattagtagt-actattttgaaatatacattgtc-cattt-----ccatcctctttgactaagctatatttttgtcatt--gcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                                                  |||| | | |  | | |    | | ||||  |  | | | || |    || | | |||  ||| |     | | | |    |  | ||    |||||  |  ||  |||||||||||||||||| || || ||||||||||| ||||| ||||||||||| | | ||||| ||||||||||||| || ||||| ||||| || || || |
gtgagtgcgattgctgcaattttgatttatttgtctgtgtggaactcatttagtctttcttcaacgtggccagtatatttcttctgaatgttatcggttacagactgttacatatattaactagcatagcagcttgaggaggattttctttgttatgcagCTAGAAGCATGTGCTCACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTAAAACAAG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 3'ss of exon 9
tagtttctttaaatcctaagtaattattagtagtactattt--tgaaatatacattgtccatttccatcctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                   ||||  ||| ||  |    |||  | |       |   ||||  |  |||||   |   ||   | | |  | || ||| ||||| ||||| ||||||||||| ||||||||||| ||| ||||||| || || ||  | |||||||| || || || || ||||||||||| || || || |
-------------------gtaagcattggtcttgaggtttcttcagtctctaagaatccaactgaatccttactatatattttgtttcctcgt-atttcagCTCGAAGCTTGTGCACATCCGTTCTTTGATGAACTCAGAGAACCAAACGCTCGTTTACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045705|gb|FQ440890.1|FQ440890
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGCGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|110398418|gb|EC964768.1|EC964768
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349821008|gb|FQ404261.1|FQ404261
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|30300367|gb|CB977161.1|CB977161
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAGTGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|110370230|gb|EC929161.1|EC929161
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         T
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcag-
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         T
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcag-
EST: gi|110716958|gb|EE092396.1|EE092396
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|30255733|gb|CB971865.1|CB971865
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCGANTCTTCGCTGCACAGCT                         CTAAAAGCATGCGCACATCCTTTCTTTGATGAGCTCCG
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCG
EST: gi|349814529|gb|FQ399169.1|FQ399169
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTT
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTT
EST: gi|22012531|gb|BQ797565.1|BQ797565
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|352786166|gb|FQ478777.1|FQ478777
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349820741|gb|FQ408570.1|FQ408570
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTG
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTG
EST: gi|349819490|gb|FQ413374.1|FQ413374
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCCTTCTTTGATGAGCTCCGAGAACCCCATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351041679|gb|FQ455889.1|FQ455889
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349812888|gb|FQ410530.1|FQ410530
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349818025|gb|FQ408014.1|FQ408014
EST:     TCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTTC-CTGCACAGCT                         CTAGAAGCATGTGCACATCC
genomic: TCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTT-CGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCC
EST: gi|71882430|gb|DT031485.1|DT031485
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351045211|gb|FQ451659.1|FQ451659
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCCTTTCTTTGATGA
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCC-TTTCTTTGATGA
EST: gi|27583598|gb|CB006293.1|CB006293
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71888191|gb|DT037246.1|DT037246
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349808118|gb|FQ403305.1|FQ403305
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71889601|gb|DT038656.1|DT038656
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|30136670|gb|CB922008.1|CB922008
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|110405706|gb|EC971253.1|EC971253
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349818252|gb|FQ409027.1|FQ409027
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCT
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCT
EST: gi|349819219|gb|FQ412113.1|FQ412113
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCAAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349820687|gb|FQ408516.1|FQ408516
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|34546636|gb|CF514868.1|CF514868
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349823319|gb|FQ402518.1|FQ402518
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|83275330|gb|DV938481.1|DV938481
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71887350|gb|DT036405.1|DT036405
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71889298|gb|DT038353.1|DT038353
EST:     CGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: CGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349815183|gb|FQ400338.1|FQ400338
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCA-TGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71888654|gb|DT037709.1|DT037709
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349820958|gb|FQ408666.1|FQ408666
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351044685|gb|FQ443216.1|FQ443216
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|110727667|gb|EE104690.1|EE104690
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|56408265|gb|CX016517.1|CX016517
EST:     ATCTTGCTTCTCGACTTCTGCAATGCTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|27582218|gb|CB004913.1|CB004913
EST:     CTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: CTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349819618|gb|FQ413502.1|FQ413502
EST:     ATCTTGCTCCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAACTCCGAGAAACCAAT
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAAT
EST: gi|349820569|gb|FQ404064.1|FQ404064
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351045218|gb|FQ451666.1|FQ451666
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCCTTCTTTGA
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGA
EST: gi|351014090|gb|FQ434242.1|FQ434242
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71883314|gb|DT032369.1|DT032369
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349812635|gb|FQ409794.1|FQ409794
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349820534|gb|FQ404029.1|FQ404029
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAAACCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|34546815|gb|CF515047.1|CF515047
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|349827560|gb|FQ422428.1|FQ422428
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCT
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCT
EST: gi|349820352|gb|FQ403968.1|FQ403968
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|352790221|gb|FQ481420.1|FQ481420
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|351023667|gb|FQ448218.1|FQ448218
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71885864|gb|DT034919.1|DT034919
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|71885157|gb|DT034212.1|DT034212
EST:     ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: ATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
EST: gi|110428134|gb|EC994596.1|EC994596
EST:     TGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCT                         CTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC
genomic: TGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTgtgagtttga ... gtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatacattgtccatttccatcctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG
                        ctttgac  putative branch site (score: 4)
                                        tttttgtc  putative PPT
                                    tatatttttgtcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagtttctttaaatcctaagtaattattagtagtactattttgaaatatacattgtccatttccatcctctttgactaagctatatttttgtcattgcagCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGG

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