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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttgagaagatgtgactgaattttctgattctatttcttggctgatgaaaaactatttaattttgcagGCTTGGGGTGTCAGAAAAATTACACTACTGGATAATGGTAAAGTGGCTATGTCTAATCCATTGAGGCAGTCCCTATATACATTGGATGACTGCCTTAATG

Basic information

species Vitis vinifera
transcript Vv10s0003g01150.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01150.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G01250.1 (Glycine max), 3'ss of exon 8
gtgagtgcttgagaagatgtgactga-attttctgattctatttcttggctgatgaaaaactatttaattttgcagGCTTGGGGTGTCAGAAAAATTACACTACTGGATAATGGTAAAGTGGCTATGTCTAATCCATTGAGGCAGTCCCTATATACATTGGATGACTGCCTTAATG
||||||| |  |||  ||   | ||    |||     |  | ||  ||     |||||||    ||  |  ||||||| ||||||||  |||||||||| ||| | || ||||| |  |||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||
gtgagtgttc-agagaatcctattgttgcttttatccttcaatttgtgataactgaaaaaactattgctcgtgcagGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactgaattttctgattctatttcttggctgatgaaaaactatttaattttgcagGCTTGGGGTGTCAGAAAAATTACACTACTGGATAATGGTAAAGTGGCTATGTCTAATCCATTGAGGCAGTCCCTATATACATTGGATGACTGCCTTAATG
                             tgatgaaaaactattt  TA-rich tract