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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacattgtaatggtattaagtactcaatgtaacattcctttttttgagtgcttagtatacgggacaagtaacaggagtggttatgttttgatagacaacaagaatacatctgttatgcctatttctatacacacttttctcattaaatgttttcctttctttcatcagAAGTACATGCCTCGAAGAAAGACGGGAGAGGAGACGAATTTCACTTATGTTGAGTGTTTGTTGTACACATTTCACCATTTAGCTTATAAG

Basic information

species Vitis vinifera
transcript Vv10s0003g00670.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362029|gb|EC925536.1|EC925536
EST:     ACCACAGGATTCACGCCAGATTCTTCCATCTGTTGTTCAGCTCTTGAAG                         AAGTACATGCCTCGAAGAAAGACGGGAGAGGAGACGAATTTCACTTATGTT
genomic: ACCACAGGATTCACGCCAGATTCTTCCATCTGTTGTTCAGCTCTTGAAGgtacacattg ... ctttcatcagAAGTACATGCCTCGAAGAAAGACGGGAGAGGAGACGAATTTCACTTATGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcctatttctatacacacttttctcattaaatgttttcctttctttcatcagAAGTACATGCCTCGAAGAAAGACGGGAGAGGAGACGAATTTCACTTATGTTGAGTGTTTGTTGTACACATTTCACCATTTAGCTTATAAG
                                  tgttttcctttctttc  CT-rich tract
                     ttttctcattaaat  TA-rich tract