Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT

Basic information

species Vitis vinifera
transcript Vv09s0054g01780.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 11
gtgagagtagttatcgttagaaaata-gaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT
||||| ||| | | | | || | |||  || |  |||  |   |  |   || | ||||||   | ||  |  |     |   | |||  |    |  |  |     ||  | | |  | ||||||| |  | ||||||||||||||||| ||||| ||||||||||||||||| || || ||||| || |||||||||||||||||||||||||||| | ||
gtgagcgtaat-agcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgttt-ctgcagGTATCTGGCCATGTTAAGAAAAGCTGCGAAGGAGAATATTGTGGTCGACCTCACCAACTTATACGATCATTTCTTTGTATCTACTGGTGAATGTAGGGCT

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 11
--------------gtgagagtagttatcgttagaaaatagaagt-ttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT
               | ||  ||   ||  | ||||| |  |  |    |||  ||||||  ||   || | |   |  ||     | ||| ||  |||        | ||| |      | ||||| | |   ||||||  | || ||||||||||||||| ||||||| ||||||||||| || || || || || || || ||||||||||||||| |||||||||||| | ||
gtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggta----ctcatttctaacta------tagtttgtttcatgaacaatttccaa---cagGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCT

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 13
gtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT
|||||  || | | | | || | | | ||  |  ||  |  ||     |||   || | || |  | ||  |||    |   | |||  |    |  |  |    |||  | | |  ||||||||| |  | ||| ||||||||||| ||||||| ||| ||||||| || || || || || || || |||||||||||||||||||||||||||| | ||
gtgagcctaat-agcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattagg--ttatttatctctaacttcagcatttgtaaacatgttt-cttcagGTATCTGGCCATGCTAAGAAAAGCTTCCAAGGAGAATGTTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTACTGGTGAATGTAGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT
            ccctaat  putative branch site (score: 3)
                                          ttttctatttc  putative PPT
                                    acaaaattttctattt  TA-rich tract