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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT

Basic information

species Vitis vinifera
transcript Vv09s0054g00700.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G24120.4 (Glycine max), 3'ss of exon 9
gtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
||||   ||     | | | ||  || |||  |||   |   |      ||    |  |||  ||| |   |||   ||  ||   || || |||||||||||||| || ||||| |||||| | |||||||| || || ||||| || |||||||||||||| || || || ||||| || || || || ||||
gtagttcttgctagaataatttggtccatagagttctttctgt------gattcctcatgccatgtgt---actgactattaac--ctttttcagCCTGAAAGTGTCCGAGAGATAACTGATGTCCTTGATGCCGTAGGAAACACAACCAAAGCTACCACCAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCAT

upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 10
gtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
||||   ||     | | | ||  || ||| ||||      ||      ||    |  |||| ||| |   |||   ||  ||    | || |||||||||||||| || ||||| |||||| | |||||||| || || ||||| || |||||||||||||| || || || ||||| || || || || ||||
gtagttcttgctagaataatttggtccatagtgtt------atttctgagattcctcttgctatgtat---actgactattaacctgtttt-cagCCTGAAAGTGTCCGAGAGATAACTGATGTCCTTGATGCCGTAGGAAACACAACCAAAGCTACCACCAAAGGGTTTGCTATTGGTTCTGCTGCTCTTGCAT

upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 10
gtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgct-cttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
                | |  | |   || || | |  ||||        |  ||   |  ||  | | |      |||  ||||| | | | ||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||||||| || || || || || ||||||||||| || ||||| ||||
---------------gtaagatgtcacatgat-tggcttgaaaggctcttatgttccatctttattctatgtagaaataataaatgtttcgtgcagCCAGAGAGTGTCCGTGAGATCACTGATCTTCTTGATGCTGTTGGGAACACCACAAAAGCAACAACGAAAGGGTTTGCCATTGGATCTGCTGCACTTGCAT

upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 3'ss of exon 11
gtagccattctacaactgaatttttc-aataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
       |   |    ||| |  ||| ||| |||         |      ||| |||   ||||  | |  |||||            |||| ||||| |||||||| || |||||||||||| |||||||||| |||||||| ||||||||||| || || || || || || |||||||| || || || ||||
------gtatgagtcatgagtggttcgaattatgcctatgttgtatctttgaattttcaagcttc-tataaaacttatcgtg------tcttgcagCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAAAGCAACAACAAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCAT

upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S105_42V6.1 (Physcomitrella patens), 3'ss of exon 11
----gtagccattcta-caactgaatttttca-ataatgttggctgaatcaaaaggaact--ttagtgctttgtttt--taacttgatacaaaatgctct-tacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
    |     ||   | | | || | ||||   |||| | | |        ||     ||  || | | ||||  ||  | | ||| |   |  |||| | | ||||| || ||||||||||||||||||||| | || ||||||||||| ||||| || ||||| || || || || || ||||| || || || ||  | || |
gtatgagtgtataggagcgattgcacttttggtataagggtagtaatgcttaatatttctatttggagttttgcattgctgatttgctg--atttgctgtctgcagCCAGAGAGTGTTCGGGAGATCACTGATTTGCTGGATGCAGTTGGTAACACTACTAAAGCAACTACTAAAGGTTTTGCCATCGGCTCAGCTGCCTTAGCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77580819|gb|DV219323.1|DV219323
EST:     TTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAG                         CCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACC
genomic: TTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattc ... gctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACCACAAAAGCTACCACCAAGGGATTCGCCATTGGATCCGCGGCACTCGCAT
                                            tgctctt  CT-rich tract
                     tttgtttttaactt  TA-rich tract