Sequence
atgc intronic sequence ATGC exonic sequencegtataatttttgctaaatttctgttgctgattgttcatctgttaggcatcatgaacagctggcacttggtttagacacagtggacctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G04150.1 (Glycine max), 3'ss of exon 10
gtataatttttgctaaatttctgttgctgattgttcatctgttaggcatcatgaacagctggcacttggtttagacacagtggacctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
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------------------gtatgctgtttttcatccatgttttcattatta--agcagccattgtcttactt---catgttaaatactac-------ttacaaatg-------ctgattaactcattctttccggtttagTTTGAAGAGGCTGCTACATAGCAAGGCTGATGCTTTCCTTTCAAATGATTATTATGACTCAGATATAGCCTGGATGGAATTG
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA20G08880.1 (Glycine max), 3'ss of exon 8
gtataatttttgctaaatttctgttgctgattgttcatctgttaggcatcatgaacagctggcacttggtttagacacagtggacctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
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------------------------------ataagcaagacagaggtacaaataggctctgataccaaatgtaaaaaaaatatccata----tactgatctaaacatgcaaatcaatttaaa----tgacatatttagA------------TACTACATAGCAAGGCTGATGCTTTCCTTTCAAATGATTATTATCACTCAGATATAGCCTGGATGGAATTG
upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G79690.1 (Arabidopsis thaliana), 3'ss of exon 10
gtataatttttgctaaatttctgttgctgattgttcatctgttaggca-tcatgaacagctggcacttggtttagacacagtggacctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
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--------------------------------gtatatatttcaaacagtttcttacccttaccatataaaatgtattcacccattcgattggc---ttagtatattgaagtattcacccacaatgctttctcat----agTTTGAAGAAGCTACTGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAGTATTATGAGTCAGACATCGCATGGATGGACTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
gtctaat putative branch site (score: 3)
ccttttttgcattt putative PPT
taatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataatttttgctaaatttctgttgctgattgttcatctgttaggcatcatgaacagctggcacttggtttagacacagtggacctgatggcacttttgtgagtgagtgagtctaatgaaaccttttttgcatttgcagTCTGAAGAGGTTGCTACACAGCAAGGCTGATGCCTTCCTTTCAAATGAATATATTGACTCAGATATAGCCTGGATGGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA