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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatacatttaaacttatacatatgattatattgtttttatcttttggaaggggtataaaagtgcttacacttttgcttctaacctgatgtcttgatctaatgcttggtttactgggaatgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATCGCCAAGAATGCAGGGGTCAACGGAAGTGTTGTGATCGAAAAG

Basic information

species Vitis vinifera
transcript Vv09s0002g03930.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363342|gb|EC926920.1|EC926920
EST:     CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAATGATGAGCAAAAG                         GTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC
genomic: CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatt ... tgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC
EST: gi|77586832|gb|DV222559.1|DV222559
EST:     CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAG                         GTTGGAGCAGATATTGTTAGGAGGGCACTAAGCTACCCAATGAAGTTAATC
genomic: CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatt ... tgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttctaacctgatgtcttgatctaatgcttggtttactgggaatgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATCGCCAAGAATGCAGGGGTCAACGGAAGTGTTGTGATCGAAAAG
                     atctaat  TA-rich tract