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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttgcatttttagtcatttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT

Basic information

species Vitis vinifera
transcript Vv09s0002g03740.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 10
------------------gtggttgcatttttagtcatttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
                    || ||  |||||  | |  |  |  | ||    | ||||    | ||| || ||| | ||||  || |  ||| ||||| |||||||| |||||||||||||||||||| || ||| ||| ||| || ||||||||  | ||||| ||||| || || ||||||||||| |||
gttaatatattctactaaaggggtgtgtttttgtttaaattct--ttgcaaataaatttagaatctcacat-ctattttatg--ttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAACTCATCCCCT

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 10
------------------gtggttgcatttttagtcatttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
                    || ||   ||||  |||  |  |  | ||    | ||||    | ||| || ||| | ||||  || |  ||| |||||||||||||| |||||||||||||||||||| || ||| |||  || || ||||||||  | ||||| ||||| || || ||||| ||||| |||
gttaatatattctactaaaggggtgtgattttgttcaaattct--ttgcaaataaatttagaatctcacat-ctattttatg--ttatgccagGGGTTTTAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCT

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G21620.2 (Glycine max), 3'ss of exon 10
gtggttgcatttttagtcatttgatggtggcttg---cacatttcttgt-------ttcagattctaatatatgatttct----tgc-agAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
  | |   || ||     |   | | ||| |||    || |||  |||        || ||| ||| | || |  ||| |    ||| || ||||| |||||||| |||||||||||||||||||| || ||| |||  || || ||||||||  | ||||| ||||| || || ||||| ||||| |||
--gttaatatattctactaaagggttgtgactttgttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTCGTGAATTCATCCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatggtggcttgcacatttcttgtttcagattctaatatatgatttcttgcagAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT
                                ttctaat  putative branch site (score: 2)
                                             tttcttgc  putative PPT
                               attctaatatatgatt  TA-rich tract