1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acgtttcctaaaatcattgtcggacaagctcttacattttttctaatcccctatgatttgtgtgatttgtcattaacacaaagaacaattgtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGGAGTAATTCATAGCTTGGTCTTAGTCTGCTAGAGGGGCAGGGCATGATG
species | Vitis vinifera |
transcript | Vv09s0002g02940.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|110357825|gb|EC921593.1|EC921593
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|30302644|gb|CB979438.1|CB979438
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|110358718|gb|EC923143.1|EC923143
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|77582912|gb|DV220448.1|DV220448
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|110357023|gb|EC920273.1|EC920273
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: AATCGATGTTGA-AAGGTCAAGCCGTACTATCTTTCCCTCATTTGAAA-G TACTTCCCTGCTAAGCTAAACTGEST: gi|45771218|gb|CN007070.1|CN007070
genomic: A-TCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATT-GAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTTTGAAGTTTGCTGEST: gi|110358259|gb|EC922343.1|EC922343
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|30302765|gb|CB979559.1|CB979559
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGTTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGEST: gi|110358025|gb|EC921945.1|EC921945
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
EST: GAATCGATGTTGAAAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAG TACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
genomic: GAATCGATGTTGAGAAGGTCAAGCCGTACTATCTTTCCCTCATTGAAAAGgttagaactg ... gtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTG
atcccctatgatttgtgtgatttgtcattaacacaaagaacaattgtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGGAGTAATTCATAGCTTGGTCTTAGTCTGCTAGAGGGGCAGGGCATGATG
cattaac putative branch site (score: 2)
tatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtttcctaaaatcattgtcggacaagctcttacattttttctaatcccctatgatttgtgtgatttgtcattaacacaaagaacaattgtggttgcagTACTTCCCTGCTAAGCTAAACTGGTGAAAGTCGGAGCTCTGAAGTTTGCTGGAGTAATTCATAGCTTGGTCTTAGTCTGCTAGAGGGGCAGGGCATGATG
- - - - -aaaatca
- - - - - - - - - - - -acaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagaa