1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTCTTTTTCAAAACTTGTAGCTGAATACTGGTCCAGTTGCTGGAGGAACTC
species | Vitis vinifera |
transcript | Vv09s0002g02440.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTEST: gi|110362756|gb|EC926308.1|EC926308
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
EST: CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTEST: gi|110381535|gb|EC934720.1|EC934720
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
EST: CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
gggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTCTTTTTCAAAACTTGTAGCTGAATACTGGTCCAGTTGCTGGAGGAACTC
aacttacataaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTCTTTTTCAAAACTTGTAGCTGAATACTGGTCCAGTTGCTGGAGGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA