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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG

Basic information

species Vitis vinifera
transcript Vv08s0105g00230.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G458728_T07 (Zea mays), 3'ss of exon 3
---------------gtaagcacc-tttcaattttattttatttttccccttcaaagcc-cagtaattccagttgctgagatattttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
               ||   ||     |||    |        |  || | ||    || |    | |      ||   |||  ||   | ||    ||| || || |||||||| ||||||  |||||||||||| ||||| ||||||||| ||||||||
tgcttgcttgctttcgtgcccatggcgtcatgcatgcaacccctcacctcatcgtgtccgcctctaattggtccgcatggatccttgtctcgtcacgcagATACCCCAAGGATTCGGACAAGATCATGCTCGCCAAGCAAACCGGGCTCACCAGGAGTCAG

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G38690.1 (Glycine max), 3'ss of exon 6
--------------gtaagcacctttcaattttat-----tttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
              || | || | ||  | ||  |     || ||| |    ||| | |    |   ||      |||||| |||  |  |||  |||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||  |||| |||
gtcttgacgaaaaagttaacaacatttgagttgttgactattaattatattactttatatattatgcatgttg--tgctgaaataactgagtttggtttcagTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G36070.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------gtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagata-ttttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
                                                                       | |  || ||| || | | |  | ||  |    |||||||   |   ||      |||||| |||  |||| |||  ||||||||||||||||||||| |||||||||||||| || |||||||||||| | ||  |||| |||
gtaagcacacttacatttataaaagttctctctttttattttattctcttgtaagtaattatggaaaaagtttacaacattttaaatgtttactgttaatttaattcaaagataatacatgttg--tgctgaaataactttgtttggatttcagTTATCCTAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGGTTAACAAGGAGCCAG

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G10040.1 (Glycine max), 3'ss of exon 4
gtaagcac-ctttcaattttattttattt------ttccccttcaaagcccagtaattccagttgctgagat------attttggttgtg----tttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
||||| |  |    ||| | || || |||      ||    ||   |         |||    || ||| ||      | ||||||| ||    ||||||||| || ||||| ||||||||||||||||| || |||||||||||||| ||| |||| |||
gtaaggatacccaaaatctcatcttttttggaaattttgattttgtaatttgaaggttctttgtgttgaaatgacttgagtttggttttggttttttcagTTACCCCAAGGACTCAGACAAGCACATGCTTGCTAAACAAACAGGGCTTACCAGGAGCCAG

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G35450.3 (Glycine max), 3'ss of exon 3
gtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtg-----tttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
||||| ||     || | |  ||| ||||     ||   |         |||    || ||| ||   |||  | ||     |||||||||||| ||||| || ||||| |||||||| || |||||||||||||||||| | || |||
gtaaggacacccaaaatctcattttttttaatattttgtaagttgaaggttctttgtgttgaaatgacttgagtttggtttttttcagTTATCCCAAGGACTCGGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGAAGCCAG

upper sequence: Vv08s0105g00230.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 3'ss of exon 3
----gtaagc-acctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
    |||| | ||  | ||    |    || |||||  |     | | ||   |   ||||  || || | | ||  || |  || || || ||||||||||| |||||||||||||| || || |||||||| ||||| || || |||
gtaagtaacccactatacacacatgcactacttttcatcactggaacaca---aactcagtctctaagttgtctttcttttaatt-agATACCCTAAGGATTCGGACAAGCACATGCTAGCTAAGCAAACAGGACTCACTCGTAGCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714978|gb|FC063948.1|FC063948
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|38516686|gb|CF983861.1|CF983861
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGNCTCA
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGG-CTCA
EST: gi|161716829|gb|FC068101.1|FC068101
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|29786121|gb|CB343619.2|CB343619
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|110728156|gb|EE103480.1|EE103480
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|71861288|gb|DT010343.1|DT010343
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCAAAGGATTCAGACAAGC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGC
EST: gi|110712074|gb|EE089283.1|EE089283
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|351056024|gb|FQ453485.1|FQ453485
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGTCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
EST: gi|161720884|gb|FC069618.1|FC069618
EST:     AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCC                         TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC
genomic: AGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacct ... tgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcagTTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAG
                                 agatatttt  TA-rich tract