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...gataattattggatttccttttgaggcttagcacctggttctttgtttctgattatattgggcactgctgctgatttcctccatctgggaatatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCTTGGATTGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAG
species | Vitis vinifera |
transcript | Vv08s0058g01360.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|32246668|gb|CD712487.1|CD712487
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: AGTGGCAATTTATTGTACATGCGAGAACATGATGCCGGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|33405593|gb|CF211220.1|CF211220
genomic: AGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|29781753|gb|CB346482.2|CB346482
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|110709458|gb|EE084946.1|EE084946
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|28959761|gb|CB339881.1|CB339881
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGGTGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|33405675|gb|CF211302.1|CF211302
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|22014493|gb|BQ799527.1|BQ799527
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|46910453|gb|CN545828.1|CN545828
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAG GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|110702269|gb|EE080793.1|EE080793
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|110390350|gb|EC955254.1|EC955254
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|30255039|gb|CB971486.1|CB971486
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CGGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGCCATCATTTEST: gi|110404060|gb|EC970018.1|EC970018
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|71875647|gb|DT024702.1|DT024702
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|110390265|gb|EC955167.1|EC955167
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCEST: gi|110371604|gb|EC935716.1|EC935716
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
EST: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGATGCCTGTATAA GTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
genomic: CAGCTGCAGTGGCAATTTATTGTACATGCGAGAACATGACGCCTGTATAAgtgagtattt ... atatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTC
tttctgattatattgggcactgctgctgatttcctccatctgggaatatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCTTGGATTGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAG
tgctgat putative branch site (score: 3)
attatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataattattggatttccttttgaggcttagcacctggttctttgtttctgattatattgggcactgctgctgatttcctccatctgggaatatatgcagGTAAACATGTTAAAACAGAGGTTAGCTGGAGCTTTATTTGGGTCATCATTCTTGGATTGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - ctggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg