Sequence
atgc intronic sequence ATGC exonic sequence...tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattttttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 10
--tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattttttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
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ttttcctattttcactatatgtatatttatttatgggaaaattgtttcagttgtt-gatattttttgcatgcattgataagtagcattgtt-cctattttagGTTTTACATAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCTGTAGATCTG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 10
tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattt-tttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
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tttcacaatatgcatatttatatattggaaaattgtttgtcagacatcagttgttgatattttttgcatgcattgataagtagcattgtt-cctattttagGTTTTACTTAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCAGTAGATCTG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 10
tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattttttccgcttt---tctttacatagaataacggataatccaact---------gtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
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------------gatgatctagggagcaatcactggcttcattcttcctcttccatctaatatctatatatatcctaccatcttagcttacttggaatctgattcgtatcagGTCTTACTTAGCCAGTGCCATCGGTATCGTGCTCTGGTGCTTCTTGGAAGATTTCTTGATATGGGTCCTTGGGCTGTCGATTTG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 10
--------tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattttttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
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atggcttaggaacattctttggcttccttcaggacgttctatcataattttgtttgcatattgccatt-ttagcgtat--ttataga--atctg---gtttgtttcagGTGTTACTTAGCCAGTGCCATCGGTTTCGTGCTCTTGTACTTCTTGGAAGATTTCTTGATATGGGTTCATGGGCTGTGGATCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
gaataac putative branch site (score: 2)
tctgtctt putative PPT
tttacatagaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtgtatttcttcctccccttgaaaaaagaaaaagaaaatcttttattttttccgcttttctttacatagaataacggataatccaactgtctgtcttagGTTTTACTGAGTCAATGCCATCGATTTCGAGCGCTGGTGCTTCTTGGAAGATTCCTTGATATGGGACCATGGGCTGTAGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -tcctccc
- - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatccaa