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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaagaaaactcataaaaagcggcttaagaaagatgtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGATCTCGAGAAGGCTGGCATTACCGTCATCCAAATTGATGAGGCTGCTTTG

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110400294|gb|EC966852.1|EC966852
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110702834|gb|EE079152.1|EE079152
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|32269944|gb|CD719103.1|CD719103
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|294965861|gb|GW837344.1|GW837344
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGACGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110405158|gb|EC970694.1|EC970694
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTTGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110699661|gb|EE076856.1|EE076856
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110374362|gb|EC939061.1|EC939061
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110404481|gb|EC969603.1|EC969603
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110429998|gb|EC996518.1|EC996518
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|32248141|gb|CD713960.1|CD713960
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110426553|gb|EC992966.1|EC992966
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110376456|gb|EC941522.1|EC941522
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110403691|gb|EC969387.1|EC969387
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTATGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|161721696|gb|FC070122.1|FC070122
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTT
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTT
EST: gi|33405706|gb|CF211333.1|CF211333
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110381130|gb|EC946448.1|EC946448
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110383670|gb|EC948053.1|EC948053
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAAAGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTAAGGG--TCAAGGACGAAGTGGAGG
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTT-GGCCATCAAGGACGAAGTGGAGG
EST: gi|110698652|gb|EE076398.1|EE076398
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         AATTTGAA-CCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAAG
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagA-TTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGG
EST: gi|110402853|gb|EC963625.1|EC963625
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|29785954|gb|CB343329.2|CB343329
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110422645|gb|EC988972.1|EC988972
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|30324405|gb|CD007667.1|CD007667
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110690135|gb|EE066968.1|EE066968
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|33408742|gb|CF214369.1|CF214369
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATC
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATC
EST: gi|161710718|gb|FC059069.1|FC059069
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110687537|gb|EE065057.1|EE065057
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|37188506|gb|CF607855.1|CF607855
EST:     TCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: TCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110688905|gb|EE067993.1|EE067993
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|110690652|gb|EE068000.1|EE068000
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
EST: gi|33409401|gb|CF215028.1|CF215028
EST:     GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAG                         ATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA
genomic: GGCCCTGTTACTATTCTGAACTGGTCCTTCGTGCGAAATGACCAGCCCAGgtattaagaa ... ttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGATCTCGAGAAGGCTGGCATTACCGTCATCCAAATTGATGAGGCTGCTTTG
              aactaat  putative branch site (score: 2)
                                            cttcttttc  putative PPT
             aaactaataatagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattaagaaaactcataaaaagcggcttaagaaagatgtatatctctctgaaactaataatagtttgcatgatttatatggcttcttttcagATTTGAAACCTGCTATCAGATTGCTTTGGCCATCAAGGACGAAGTGGAGGATCTCGAGAAGGCTGGCATTACCGTCATCCAAATTGATGAGGCTGCTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT