Sequence
atgc intronic sequence ATGC exonic sequence...cataactattcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 10
--cataactat-tcctgaatgattattatttatttatttatttatttt-tattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
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ttcgatatgatattttgtgtgttttcaattgagatgcttccctgctagatattaaatttgcgtgttactgccaacttaacagttaagtaccttt----ttgtagCCGAGCAAAAACAGTGAATGAGAATTTAAAGATGAGTGCCGCCCTCCTCTCTCGGTTTGACTTGGTTTTCATTTTACTTGACAAGCCAGATGAATTGCTG
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G163658_T01 (Zea mays), 3'ss of exon 9
----cataactattcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatactcattaaattatattcaa-attgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
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gtttttcttgttttcctttgtttttactgaggattcaagactgaattctcatggctattgtatgctattttatg-----ccatctaaatacattgattgttacagCCGAGCAAAAACAGTGAACGAGAATCTAAAAATGAGTGCTGCCCTCCTTTCTCGATTTGACTTGGTGTTTATTCTACTTGACAAGCCAGATGAGTCACTA
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 9
-------------------------------cataactattcctgaatgattattatttat-ttatttatttatttttattcatcatat---aggctccttcataaatactcattaaattatattc-aaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
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gaggttctttaatttgtataaattgtattctattatttactatcaaaataaagccagtcatgtaacgtagcagtgcttctttgacaaattttgtacaaagGTATCATTATATTGAAAGCTATATTCCAAATTGCAGCCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTA------------------------------------
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 10
------------cataactat-tcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
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gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtttgaaatatagtaacgacaatgtatgttc-ttgatatttacattgtct-ttatgatctcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S16_310V6.1 (Physcomitrella patens), 3'ss of exon 8
cataactattcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatact-cattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
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cggacgggagtttatttgttcgaagtctgttttgttgtatcaataggtaatatttacggctaacttcacagttctgactctaagtgagagttgtgc-gcagTCGCTCAAAAACAGTGAATGAAAACCTGAAGATGAGTGCAGCTATCCTCTCACGTTTTGACCTTCTATTCATATTACTTGACAAACCTGACGAGGACATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
ttcataaatactcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataactattcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG
- - - - ttcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaata