Sequence
atgc intronic sequence ATGC exonic sequence...ccataattcattcactatttcttgtagtttggtaaaaccaatattaccgcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G36140.1 (Glycine max), 3'ss of exon 10
---ccataattcattcactatttcttgtagtttggtaaaaccaatattacc-gcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG
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actctcaaatttagaaaataaaac--aatattttttaagttatatttgatttaaaattcctaattcttaccttttgtt--atcaaacctatatggtgtcaacagGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGAATGATCAAAGAGAATTACGGTTTAG
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G36140.3 (Glycine max), 3'ss of exon 12
---ccataattcattcactatttcttgtagtttggtaaaaccaatattacc-gcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG---------------------------------------
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actctcaaatttagaaaataaaac--aatattttttaagttatatttgatttaaaattcctaattcttaccttttgtt--atcaaacctatatggtgtcaacagGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGAATGATCAAAGAGAATTACGGTTTAGGTATGAATGGGAGATTTTAGATATATAATGCTACAATAC
upper sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G33410.1 (Glycine max), 3'ss of exon 10
-----ccataattcattcactatttcttgtagtttggtaaaaccaatattaccgcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG
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aaatttagcaaataaaacaatttagtattttgctagttatatttgattttggaaaag-tcctaattcttactttttgtt--atcaaacctatggtgc--caacagGTTGAAGCTCATTTGGTTGTTCTTGCAGTTCTTCGAATGATCAAAGAGAATTACAGTTTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accgcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG
atctaat putative branch site (score: 3)
tttatatctaattttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccataattcattcactatttcttgtagtttggtaaaaccaatattaccgcatctccttattgttgctttatatctaattttccttattatgtattgacagGTTGAAGCTCGGATTGTCGTCCTTGCAGTTCTTCGAATGATCAAGGAGAACTACATACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - cattcac
- - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - -catctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct