Sequence
atgc intronic sequence ATGC exonic sequence...ctctactcagctgcctattgatataaatcatgatttttatgcctccaagtttctttaccctcatgtttaatttatgccaattgattttacttaaatacagCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G36300.2 (Glycine max), 3'ss of exon 10
ctctactcagctgcctattgatataaatcatgatttttatgcctccaagtttctttaccctcatgtttaatttatgccaat-tgattttac---ttaaatacagCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
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---taatct-ctgttaatcatcaccaataggtactctaatgctaacttgttaaattagcagtttttgtgatttccttaattctgatctcttgcattgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGTGGCATGGATTTCAAAGGTGTGAACTGTG
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G33590.1 (Glycine max), 3'ss of exon 10
-ctctactcagctgcctattgatataaatcatgatttt-tatgcctccaagtttctttaccctcatg-tttaatttatgccaattgattttacttaaatacagCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
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cttttaatcatc-accaataggtactc-taatgctaaagcatacttgttaaattagcagtttttgtggtttccttaattctgatctcttgca-ttgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTG
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G09720.1 (Arabidopsis thaliana), 3'ss of exon 11
ctctactcagctgcc-tattgatataaatcatgatttttatgcctcca-agtttctttaccctcatgtttaatttatgccaattgattttac-ttaaatac---agCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
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gtaaaatcatctttcatgtagtcatcaa--ataaagtttgctcctctatggaaagtatagagatatata-aattgatatgaaacaatttaccattggatgctgcagCGGGAAAATGCAGTTGATCAATTCAGAGCGGGAGAAAAATGGGTTTTGATAGCCACTGATGTGATTGCCAGAGGTATGGATTTCAAAGGCATCAACTGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagtttctttaccctcatgtttaatttatgccaattgattttacttaaatacagCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
aattgat putative branch site (score: 4)
ttttactt CT-rich tract
aattgattttacttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctctactcagctgcctattgatataaatcatgatttttatgcctccaagtttctttaccctcatgtttaatttatgccaattgattttacttaaatacagCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTG
- - - - -gctgcct
- - - - - - - - - - - - aaatcat
- - - - - - - - - - - - - - - - - - - - -cctccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcca