Sequence
atgc intronic sequence ATGC exonic sequence...ttaggttgtcaatataaaactagaaaactagtagctttggtgaatttctgcatttataatgccatcttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G23840.1 (Glycine max), 3'ss of exon 11
ttaggttgtcaatataaaactagaaaact--agtagctttggtgaatttctgcatttataat-gccatcttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC
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--gagtggtatacattaa-ccagacttttttatttggatagttaagttgcatcttgtatcattatcagcatccataacttttaagttctatgtatgtattcagGATGAGTTGAAATTAAGCAGTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCC
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 12
ttaggttgtcaatataaaactagaaaactagtagctttggtgaatttctgcatttataatgccatcttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC--------------------
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---------------------------------------------------------------------gtaacttttaagttctt-tgtatatattcaggatgagttgaaaataagcagTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGATAGCCTTACCAACATTAGTGTGGGGGATCTACTTTCAGGAGTGTCCCAGGATCTTGATAACTGCATC
upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 11
-------ttaggttgt-caatataaaactagaaaactagtagctttggtgaatt--tctgcat-ttataatgccatc----ttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC
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gtactacatggtttgagtggtatacattaaccagacttttttatttggatagttaagttgcatcttgtatcattatcagcatccataacttttaagttcta-tgtatgtattcagGATGAGTTGAAATTAAGCAGTGGAGCAGGACTGTCAGCTGGAGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctgcatttataatgccatcttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC
atcttttttacttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaggttgtcaatataaaactagaaaactagtagctttggtgaatttctgcatttataatgccatcttttttacttgtaatttttcctgtgtatcattagGATGACCTTAGAATAAGCAGTAGTACTGCCCTATCAACTGGAGAATGGGCTGACAGCCTTACAAACATAAGTGTTGGGGATCTACTCGCAGACGTGTCTC
- - - - - - - -aaaacta
- - - - - - - - - - - - - - - - - - - - - - - -ctgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctgt