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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatatgcccagtcccttgactctgtttgtaaatgtttgtgtgcttttattttctttctttttttttttctgaagaaaaaaattctattcaattgacatgttttttctttgtttttttcttgttgctttaaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA

Basic information

species Vitis vinifera
transcript Vv08s0040g00320.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os11g03780.2 (Oryza sativa), 3'ss of exon 9
gtaagcatatgcccagtcccttgactctgtttgtaaatgtttgtgtgcttttattttctttctttttttttttctgaagaaaaaaattctattcaattgacatgttttttctttgtttttttcttgttgctttaaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA
                                        |  |    | || || | | | ||||| || || |     |     |  |||     |  ||||    ||   || ||     || |  |||   ||||  ||| ||||||||| ||||||||||||||||||| |  || | ||| |||||| | 
---------------------------------------gtaatacattattcttatttatatttttcttgttttaccatatgttttcttatc--gctagcatgcccattaactgcttacagtttttatctt--gaaatttagGGATCAGCCACCATGATGAAGTCGATACCACCATAATTGAACCTTTTGTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406071|gb|CF211698.1|CF211698
EST:     CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG                         GAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC
genomic: CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATGgtaagcatat ... aaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC
EST: gi|161713110|gb|FC062474.1|FC062474
EST:     CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG                         GAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC
genomic: CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATGgtaagcatat ... aaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC
EST: gi|161713404|gb|FC062796.1|FC062796
EST:     CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATG                         GAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC
genomic: CTAGCGGAGGACATTGGTGCATTGCCAGTGTGGGTGTTCAACAATGgtaagcatat ... aaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattcaattgacatgttttttctttgtttttttcttgttgctttaaaaatacagGAATCAGCCACAATGATGAAGTCGATACCACTAGTATCGGACCCTTTGTTCAA
      aattgac  putative branch site (score: 3)
                ttttttctttgttttt  putative PPT
             atgttttttctttgtt  TA-rich tract