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gtaataatattgcttggtctattaaatcagaaaaatatgccactcttttcttttcagcaagggtcatttttttccttgctcttcttgtttgaggttaccaattcagtgagggtgtttttccactattcttgtttgaggtttgttgtggttgtctttcgaactaaatattcatgttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGCAGTGGTCTTCACTCCTATCCTCATGGAAGGGAATTTCATTTACTGCAA
species | Vitis vinifera |
transcript | Vv08s0007g08110.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|83275962|gb|DV939970.1|DV939970
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAGTTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110695893|gb|EE074430.1|EE074430
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110410507|gb|EC976190.1|EC976190
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110358248|gb|EC922324.1|EC922324
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTTTTGGGCATGCCTCCTTATTTTAGGGGCTCTAAAGTTCTTGEST: gi|110427310|gb|EC993745.1|EC993745
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110715335|gb|EE093264.1|EE093264
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: AGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|30252653|gb|CB970204.1|CB970204
genomic: AGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110703094|gb|EE079637.1|EE079637
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAAGGGCTCTAAAGTTCTTGEST: gi|110688154|gb|EE066378.1|EE066378
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110696827|gb|EE073281.1|EE073281
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110730631|gb|EE107931.1|EE107931
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|22008496|gb|BQ793530.1|BQ793530
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|83275755|gb|DV939763.1|DV939763
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110373043|gb|EC937250.1|EC937250
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110378825|gb|EC943977.1|EC943977
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|30137479|gb|CB922817.1|CB922817
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|110388620|gb|EC953390.1|EC953390
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGEST: gi|34320814|gb|CF373568.1|CF373568
genomic: TTGGTGAAGGAGAATTTCAAGACACTGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
EST: TGGTCGACCAATAAAGTCCCTTTTG GTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
genomic: TGGTCGACCAATAAAGTCCCTTTTGgtaataatat ... ttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTG
ttgtttgaggtttgttgtggttgtctttcgaactaaatattcatgttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGCAGTGGTCTTCACTCCTATCCTCATGGAAGGGAATTTCATTTACTGCAA
aactaaa putative branch site (score: 2)
aactaaatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatattgcttggtctattaaatcagaaaaatatgccactcttttcttttcagcaagggtcatttttttccttgctcttcttgtttgaggttaccaattcagtgagggtgtttttccactattcttgtttgaggtttgttgtggttgtctttcgaactaaatattcatgttgggtacagGTTGTCATCTCTTGGGCATGCCTCCTTATCTTAGGGGCTCTAAAGTTCTTGCAGTGGTCTTCACTCCTATCCTCATGGAAGGGAATTTCATTTACTGCAA
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