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...ccttaatcaaaatgttgagacaaattttacatatagttgttggtcggtctgaatgatggttattttaatatcatctaacaatagtagcatgaattttcagGTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACAGATCCACAACATCTAGCTGCAGTACTGAGATTCTTTTCAGATTTTATTC
species | Vitis vinifera |
transcript | Vv08s0007g06830.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGATGGATATTATCTGGAAGCTTTACGTTATGCCCGGAAGAATAAG GTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACAEST: gi|110391458|gb|EC956435.1|EC956435
genomic: TGCAAGATGGATATTATCTGGAAGCTTTACGTTATGCCCGGAAGAATAAGgtgattctta ... gaattttcagGTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACA
EST: TGCAAGATGGATATTATCTGGAAGCTTTACGTTATGCCCGGAAGAATAAG GTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACA
genomic: TGCAAGATGGATATTATCTGGAAGCTTTACGTTATGCCCGGAAGAATAAGgtgattctta ... gaattttcagGTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACA
ggtctgaatgatggttattttaatatcatctaacaatagtagcatgaattttcagGTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACAGATCCACAACATCTAGCTGCAGTACTGAGATTCTTTTCAGATTTTATTC
atctaac putative branch site (score: 2)
ttttc putative PPT
ttattttaatatcatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttaatcaaaatgttgagacaaattttacatatagttgttggtcggtctgaatgatggttattttaatatcatctaacaatagtagcatgaattttcagGTGACTACTGTCCGGCCTTCATTGTTTCTTGAAGCAGCATTTGCATCCACAGATCCACAACATCTAGCTGCAGTACTGAGATTCTTTTCAGATTTTATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - aatcaaa
- - - - - - - - gagacaa
- - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata