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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctctatcgacttatatttggcatttggcagactcattccaactttttcccagagcacctgctaaaatgacacttttatataaaatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g03930.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G21450.2 (Glycine max), 3'ss of exon 10
---------------------------------------------------------------gtaggtctctatcga---cttatatttggcatttggcagactcat-tccaactttttcccagagcacctgctaaaatgacacttttata-taaaatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAG
                                                               || |   || |   |    |||    ||  |||   |  |        ||  |||||  | |   ||||  |||| ||  | || |  | || ||  | |||| ||    || ||| |||| || ||||| |||||||| ||||| || |||||||| ||||| | ||| |||||||||||||||| ||| ||||| ||||||
gtaacttacctgtaatatgaaaaagtgaattctgtaatgcatacactcctgaagtgacataaagttgacttcaaagaaaattttaagactgaaattgatctaataagcactcagttttttatctgtaaaccttataaactgtaatttgtggaatataactgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAAGCATGTGTTCAAAAAGAATCCAAAGGCTCCTATCTGGGGTAAGCCTCCAAAAGTCATTGGTGGAAAG

upper sequence: Vv08s0007g03930.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G07580.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gtaggtctctatcgact--tatatttggcatttggcagactcattccaac-tttttcccagagcacctgctaaaatgacacttttata-taaaatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAG
                                                               || |   |  |   | |  ||    ||  |||   |  |      |  || ||| |  | |   ||||  |||| ||  |  | |  | ||  |  | |||| ||    || ||| |||| || ||||| ||||| || || || || |||||||| ||||| | |||||||||||||||||||| ||| ||||| ||||||
gtaacttacctgtaatatgtaaaagtgaattctgtaatgcatatactcctgaagggacataaagttgacttaaagaaaatgttaagactgaaattgatctaataagaactgacatttgtatctgtaaaccttataaactgtaatctgtggaatattaccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390091|gb|EC954979.1|EC954979
EST:     GACCTAACAACAGCTGCTATTGTTGCTAATTGCTTTGTTTTTCTGATGGG                         GTATCGAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAA
genomic: GACCTAACAACAGCTGCTATTGTTGCAAATTGCTTTGTTTTTCTGATGGGgtaggtctct ... aatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaactttttcccagagcacctgctaaaatgacacttttatataaaatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAG
                     tgctaaa  putative branch site (score: 2)
                        taaaatgacactttta  TA-rich tract