Sequence
atgc intronic sequence ATGC exonic sequence...cattgaatagacagtggttttgtgctgttgtcagtcagctaatctactctgtagtattttcttgatttattgaccattaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G028535_T02 (Zea mays), 3'ss of exon 10
cattgaatagacagtggttttgtgctgttgtcagtcagctaatctactctgtagtattttcttgatttattgaccattaat--ttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
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-------------------gtaacctttgattcataagtgaagcacatatacaatatctacaagatcaat-aattatttatggttgatacgttgttgtacagATTGCATCTCTAGCGATCCGAAGTGGTAATGGTCTCCTTTTGAAAGGAGGGAAAGAAGTTATGAGATCAAATGCAATATTACACAAG
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G16510.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------------cattgaatagacagtggttttgtgctgttgtcagtcag------ctaatctactctgtagtattttcttgatttattgaccattaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
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gttaagagaccctattccttctcgtttctaatccattctacatcttcaattaaaatgtcaaggatatgagcaacaatagagatctattattttgagtctagtgatactaatcaagttttgaaaatgtgtttattgtattaa--gatagttgttgaaattcattaatagATAGCTGCATTGGCAATTCGAAGTGGAAATGGTCTACTGCTTAAAGGAGGGAAGGAAGCCAAACGATCAAATGCAATCTTACACAAG
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 11
cattgaatagacagtggttttgt-gctgttgtcagtcagctaatctactctgtagtattttcttgatttattgacca-ttaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
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-aatcttctgactctacttttattgatgaagtgtgttgtttgaaattgttta-gttgttttggatatttatcttcaagttgtttggttaaacggattaacagATAGCTGCATTGGCAATTCGAAGTGGGAATGGTTTACTGCTTAAAGGTGGAAAGGAAGCCCGACGATCAAATGCAATCTTACACAAG
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 10
cattgaatagacagtggttttgtgctgttgtcagtcagctaatctactctgtagtattttcttgatttattgacca-ttaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
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aatcttctaagtctacttttattgataatgtatgttgtttgaaattgttta-gttgttttggatatttatctttaagttgtttggttaaattgataaacagATAGCTGCATTGGCAATTCGAAGTGGGAATGGTTTACTGCTTAAAGGTGGAAAGGAAGCCCGACGATCAAATGCAATCTTACACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actctgtagtattttcttgatttattgaccattaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
tattttcttgatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattgaatagacagtggttttgtgctgttgtcagtcagctaatctactctgtagtattttcttgatttattgaccattaatttttttaatgattcaatagATAGCTTCATTAGCAATTCGGAGTGGGAACGGTTTACTGTTGAAAGGAGGGAAAGAAGCTAATAGATCAAATGCAATCTTGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - gaataga
- - - - - - - - - tttgtgc
- - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - ctctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattaa