Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttctcctacttacaaccatgttcttgtagtatctttactgcatttccagaacaaagttttgatagtgaatgctaattgtgacttcagGGGACAAAAACATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA

Basic information

species Vitis vinifera
transcript Vv07s0141g00110.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G030138_T01 (Zea mays), 3'ss of exon 11
gttagttttctcctacttacaaccatgttcttgtagtatctttactgcatttccagaacaaagttttgatagtgaatgctaattgtgacttcagGGGACAAAAACATTG-AGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA
                        ||||| ||  ||    | || |       ||     ||||| |||||   | | || ||||       |    ||   |   ||  | ||| | ||||| ||  | |||||||||||  ||||||| ||||| |||||||| |||||||||||||| 
---------------------gtaatgttttttcagcccatatattat-----caacttgaagttatgatatgcagttcttattgaaga---aaataacgttagtgttacatcagCTCAACCAAATCAGAGACTCTTTGGCGGTTATGGGAGATAACAGTACAGCTTTTAGCTTACCACAG

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
------------------------------------gttagttttctcctactt---acaaccatgttcttgtagtatctt---tactgcatttccagaacaaagttttgatagtg-aatgctaattgtgac----ttcagGGGACAAAAA--CA--TTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA
                                    |||   | | |  | |     ||||  || ||  ||| |||| ||   | ||  | ||| |   | || | |   |||   | | |    ||  |     || |    || ||||  ||  || | ||||| || || || ||||| || ||||||||||||||||| || || || |||||||||||||| |||
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 12
----------------------------------------------------gttagttttctcctacttacaaccatgttcttgtagtatctttactgc---------atttccag-----aacaaagttttgatagtg-aatgctaattgtgacttcagGGGACAAAAAC---ATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA
                                                      || ||   | |     ||||  || ||  | | |||| ||  || |         ||||||       |  ||| |  |  ||||       | | | ||  ||        ||||      ||   ||||| || || || || || || |||||| |||||||||| || ||||| |||||||||||||| |||
gtatggttttccatttgttttaaagcaaatgatctgatggaaggctttgtttactatttaattgcagggaacaaaaatattgatatggtattttatcttctaaaattcaatttccgattatcagtaaaatagtactagtctggaattgaatatgttttataacactaaaagtcaacttcgtcagGTCAATCAAATCCGAGATTCATTGGCTGTTATGGGTGACAACAGTACTGCCTTTAGCTTACCGCAA

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 11
gttagttttctcctacttacaaccatgttcttgtagtatctttactgcatttccagaacaaagttttgatagtgaatgctaattgtgacttcagGGG-ACAAAAACATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA
                                   |||| ||  ||    |||   | |  |    | ||  | | |  ||  |  ||  |||            | ||   ||||||||||||||||||||||| |||||||| |||||||| || || ||||||||||||||||| || 
-----------------------------------gtatgttctcttgtgttctgcatcgtacaggtaatcatcattattatctcagaaatcattcttgttgtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttactgcatttccagaacaaagttttgatagtgaatgctaattgtgacttcagGGGACAAAAACATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA
                                     tgctaat  putative branch site (score: 2)
                    aaagtttt  TA-rich tract