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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaccattttaaacacgaatcagttcagtcatgtttgagtaacagtctaggaatttaaagattcaataatataaaaaataaagttgaatggagtttggctgcagctccactaatttctttcaataaccattttcattgttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTGGCACAGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGG

Basic information

species Vitis vinifera
transcript Vv07s0130g00410.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G175510_T01 (Zea mays), 3'ss of exon 11
gtgaaccattttaaacacgaatcagttcagtcatgtttgagtaacagtctaggaatttaaagattcaataatataaaaaataaagttgaatggagtttggctgcagctccactaatttctttcaataaccattttcatt--gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTGGCACAGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGG
                                              | |||   ||     |   |  | || | |    |   | ||| |||| | | ||  |   ||    |  | |  |   | |   ||||  ||   |||  ||||||||| ||||||||||||||| | || |||||||| || ||| |||| ||||| || ||||||||  | ||||| ||  |||  |||||   ||| ||||
----------------------------------------------gactacatatacgttgcaactgtgatgtta----ttgtgctgagtggattattgc-actattctttgatgtgcaattcctgattgtttttgtttgtttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGGCCCAAAATTGTGGTTTGAATGTTATTAGGATAATGACACAACTTCAGG

upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G069765_T05 (Zea mays), 3'ss of exon 11
gtgaaccattttaaacacgaatcagttcagtcatgtttgagtaacagtctaggaatttaaagattcaataatataaaaa-ataaagttgaatggagtttggctgcag-ctccactaatt--tctttcaataaccattttcattgttgat-tcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTGGCACAGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGG
                                                      |  || |  ||  | ||| | |    ||   | | | |||| ||| ||  ||  ||    |      | | | | |     | ||   |||| || ||||||||| ||||||||||||||| | || |||||||| || ||| |||| ||||| || ||||| ||  | ||||| ||  |||  |||||   ||| || |
-----------------------------------------------------cacatatactttgta-aatgtgatgttattgtgctcagtggatttttgcaccattctttgatgtgcaatttctgattggttttgttttctgtttatgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGGCCCAAAATTGCGGTTTGAATGTTATTAGGATAATGACACAACTTCAAG

upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G26360.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgaaccattttaaacacgaatcagttcagtcatgtttgagtaacagtctaggaatttaaagattcaataatataaaaaata-aagttgaatggagtttggctgcagctcc--actaat-ttctttcaataaccattttcattgttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTGGCACAGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGG
      |  |||       | |   ||  ||  |  |||  ||| |||   |  ||||   |    |   ||||  |   |  ||   || |    | |  |  | |   |  |  ||| ||||||   |   |    || || || |  ||||||||||||||||| |||||  | ||||| |||||||| ||||| ||  |||| || || ||||||||||| ||||| || || ||||||||| | || |
----gtcggttttgcttttattacattttgtt-tccttgcctaa-agttgtgtgattttgtgtcaaatctatatcgagcctctaaaacgagtatgctgttcccacggtcgctgataaatgttcttttgttggtctgaatc-ttatttaaacagTGGCCTTATGAAGCAGCTGCCATTGCTTTCGAGGCTATTCCACGTACCCTGGCTCAAAACTGTGGGGTTAACGTGATCCGTACTATGACTGCATTGCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808330|gb|FQ405474.1|FQ405474
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
EST: gi|161716160|gb|FC065852.1|FC065852
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGC
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGC
EST: gi|33405452|gb|CF211079.1|CF211079
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
EST: gi|349823591|gb|FQ415001.1|FQ415001
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
EST: gi|351034297|gb|FQ448094.1|FQ448094
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
EST: gi|110426184|gb|EC992582.1|EC992582
EST:     TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAG                         TGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG
genomic: TATCTGCTACCCTGAAGCAGAAGAGTTCATCTATTGAAGGGATAGAAAAGgtgaaccatt ... gttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttggctgcagctccactaatttctttcaataaccattttcattgttgattcagTGGCCTTATGAAGCTGCTGCTGTGGCTTTTGAGGCTATACCACGGACATTGGCACAGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGG
                  taatttctttcaataa  TA-rich tract