1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtttctgaaccctcaaattgaggagtgggaccttttgttcccgttttttttttacccttttcctttcaattcttgagtaatcacatggattgttgttgatacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTGGAGATGTAGGTGGTGGTGTTGGGAAGTACTTGAAGGCAAGGACTGGTC
species | Vitis vinifera |
transcript | Vv07s0129g00040.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTEST: gi|32457546|gb|CD798720.1|CD798720
genomic: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
EST: GAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTEST: gi|110715857|gb|EE094386.1|EE094386
genomic: GAGGAAGAGAAAACCAAAGATGGGAAGAATG-C-CGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
EST: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAAT GATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
genomic: AAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATgttagtttct ... tacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCT
cccttttcctttcaattcttgagtaatcacatggattgttgttgatacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTGGAGATGTAGGTGGTGGTGTTGGGAAGTACTTGAAGGCAAGGACTGGTC
tgttgat putative branch site (score: 4)
tttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttctgaaccctcaaattgaggagtgggaccttttgttcccgttttttttttacccttttcctttcaattcttgagtaatcacatggattgttgttgatacatttcagGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTGGAGATGTAGGTGGTGGTGTTGGGAAGTACTTGAAGGCAAGGACTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG