Sequence
atgc intronic sequence ATGC exonic sequencegtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g70950.2 (Oryza sativa), 3'ss of exon 2
gtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
| || || || | ||| || | || | | ||| ||||| | || | | | || | ||||| ||||| |||||||||||||| ||||| || |||||||||||||||| ||||||| ||| ||| | || || | ||| | || || ||
------------------gttcttgcttaaa----tgtctggcac--atccatttttttat-tgtcacata-atgtactaactacagtctattttagGTTATTGTCTCATGGAATGGACTAGCTATATCTGCTTTTGCAAGAGCTTCCCAAATTCTGAAATCAGAACCAACTGGAACCAGATTTTGTTTCCCAATTA
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 10
gtaacatct-taaacaaccatct---tttctgaagaacttacct--gat-actcaaccttc--ctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
||| || | || || | | | ||| | | | |||| ||| | | |||| || ||| ||| | | | | | | || |||| |||||| |||||||||||||||||||| || || ||||||||||| || |||||||| |||||||| |||||| ||| ||||| |||||| ||||||||| |
gtatttcctctgaataatcttatggatttatttgggatccacctatgatgatctagacttcaacttttatgtgtactcccaactcaagggttcctatgctc-ctagGTTATTGTATCATGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAGATTCTCAAGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCG
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 10
gtaacatc-ttaaacaaccatctt---ttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaaga--tcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
||| | || || || | | || || | | | |||| || | | || | | || | ||| | | | ||| || |||| |||||| |||||||| ||||||||||| || || ||||||||||| || |||||||| |||||||| |||||||||| ||||| |||||| |||||||||
gtatttcccttgaataatcttattgatttatttgggatccacct-atgtt-gatctagacatcaacttttatgtgtactctcaagggttcctatgctc-ctagGTTATTGTATCGTGGAATGGACTGGCAATCTCATCTTTTGCCAGGGCTTCTAAGATTCTCAAGGGTGAAGCTGAAGGGACCAAATTCTACTTTCCTGTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30254986|gb|CB971433.1|CB971433EST: AGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAG GTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCT
genomic: AGCTTTTTGATGTCAGATTGAATCGTCCAAGACCGCATTTGGATGATAAGgtaacatctt ... tgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
ctcttac putative branch site (score: 3)
attttaaagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatcttaaacaaccatcttttctgaagaacttacctgatactcaaccttcctcttacctgtcatgcacattttaaagatcaggtgcttgctagGTAATTGTATCATGGAATGGACTTGCTATTTCATCTTTTGCAAGAGCTTCTAAAATTCTCAAAAGTGAAGCTGAGGGGACTAAATTCCGCTTTCCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA