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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttaattaagcctattttttttctgcttttttccccctagagaacaatatatatcaagttaactctttggaagctcaatgcctttgcccatcaattgaataatatgtacaaactcaatggcttgctaatgattttacatgattcaatagcagtgtacttattggttcccttttctgacctttgcttcagTGGTATTCTTCTTGATATATCTTTTGAGCCACAACATCAGCAGGAAGACATGTCAATCCCTGATTCTCCTATGTGAGGTTCATTTTGCACTGTTGTACAT

Basic information

species Vitis vinifera
transcript Vv07s0104g00760.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00760.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G48060.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatgttttaattaagcctattttttttctgcttttttccccctagagaacaatatatatcaagttaactctttggaagctcaatgcctttgcccatcaattgaataatatgtacaaactcaatggcttgctaatgattttacatgattcaatagcagtgtacttattggttcccttttctgacctttgcttcagTGGTATTCTTCTTGATATATCTTTTGAGCCACAACATCAGCAGGAAGACATGTCAATCCCTGATTCTCCTATGTGAGGTTCATTTTGCACTGTTGTACAT
                                                                          | | | | | | ||  | ||  |   ||  |||| | | |   |   |   |  || |  |||    ||||  |||| |   | ||||            |||    ||| | |  ||||||| |||||||| | || ||||| |||||||||||||||| ||| |||| | |  | ||| ||||||| |||||||| ||||||||||||||  | |||||
--------------------------------------------------------------------------gtatgatta-tccccctcccatttgcttttataacaaggattcatgtatctgggtgtttgtgaaaa-acattgttca-tgatactgtat-----------cttaatggacttct--ttcagTGATATTCTTCCTTATGTATCTGTTGAGCCACAACATCAACAGAAAGATACGCAAGTCCTTGATTCTACTATGTGAAGTTCATTTTGCACTTCTCTACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatgattcaatagcagtgtacttattggttcccttttctgacctttgcttcagTGGTATTCTTCTTGATATATCTTTTGAGCCACAACATCAGCAGGAAGACATGTCAATCCCTGATTCTCCTATGTGAGGTTCATTTTGCACTGTTGTACAT
                                     ttctgac  putative branch site (score: 2)
                              ttcccttttctgacct  CT-rich tract
      attcaata  TA-rich tract