Sequence
atgc intronic sequence ATGC exonic sequence...ctttcctaatgttctttacatccaaatcctaatcagtgatcagtagcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 10
---ctttcctaatgttctttacatccaaatcctaatcagtgatcagtagcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
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atgttaaattcattattgtcatttctattgtctaaagaaagacagaataaacattttttat--tcattctgaacattgatatcttgtgt-tgtgctttaatagGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGCAGAAAGGCTGACAATTCTCTCCCTGGAT
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G33480.1 (Glycine max), 3'ss of exon 4
---ctttcctaatgttctttacatccaaatcctaatcagtgatcagtagcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
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atgttaaattcattattgtcatttttattctctaaagaaagacaaaataaacatttttgat--tcattttgaacattgatatcttgtgtc-gtgctttgatagGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGAT
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 10
-------ctttcctaatgttctttacatccaaatcctaatcagtgatcagtagcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
|| || ||| ||| || | |||| | || | | | | || | | | | || | || || | || ||||||| || || | || || |||||| | ||||| ||||| |||||||||||||| ||||||||||||| || ||||| || || || || |||||||
atgttaaattcattattgtcgtttttattc----tctaaagaaagacaaaataaacattttttat--tcattctgaacattgatatcttgtgtc-gtgctttgatagGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
tttctgtaccttttc CT-rich tract
tcaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttcctaatgttctttacatccaaatcctaatcagtgatcagtagcccccccatgacggccacccacagtctccctctcaaatttctgtaccttttcagGTGGGTTACCTTGCAGCTTCTATAAGATCTGTAGCAGATGCAAGAGTGGGTGACACCATTACTCACTATGGTAGGAAGGCGGAAAACTCCCTGCCTGGAT
- - cctaatg
- - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccca