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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagttttctctggaacgtcttttccaggttaatataaaaaatcaaatcctgactgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 6
gtaagaagttt-tctctggaacgtcttttccaggttaatataaaaaatcaaatcctgactgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
||||| | | | |  |    |  |  | |  ||  |  |    |    ||| |    || ||||||  | ||||||||| | || ||||| |||||||| ||||||||||  ||  |||| |||||| ||||||| |||||||||||||| || |||||||||||||| ||||| |
gtaagtattctgttccctatatatagtatgtagagtgtttaggacctacaattataaaccgtttaattgattgcagATAATTTTGGCTGTTGGAACAAAACTTCAAGCTGCACTGGCAAACATGGCTATTGAAATTACAGAAAGACATGCTGTTGTCCAAGGGATTCCTCTTGTTC

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 10
gtaagaagttttctctggaacgtcttttccaggttaatataaaaaatcaaatcctga-ctgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
||||| | | |  |||      | | |   |   | | ||   |  || |||  | | |  ||| |  |||||||| || | || ||||| |||||||| ||||||||| |  |  |||||||||||||||||||||| |||||||||||||| |||||||| || || ||||| |
gtaagcattctgttctctg-tatatatgaaattctcaaattggatctcgaattgtaagccatttgattggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G36170.1 (Glycine max), 3'ss of exon 9
---------------------------------------------------------------------------------------------gtaagaagttt--tctctgga---acgtcttttccaggttaatataaaaaatcaaatcctga-ctgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
                                                                                             ||||| | | |  ||| || |   | |   ||  ||  ||    |   |  |  |||  | | |  ||| |  ||||||||||| | || ||||| |||||||| ||||||||  |  |  |||| ||||||||||||||||| |||||||||||||| |||||||| || || ||||| |
gttaattttgtagttgaaaattcaactaaattcaattaatataattttgcaggatggcacaccgtactttgggcagccttaattcctgttgttgtaagcattctgttctttgtatatatgaaattctcaaattggc-tgtgatctagaattgtaagccatttgattggttgcagATAATTTTGGCTGTTGGAACAAAACTTCAAGCCATATTGGCAAATATGGCTCTTGAAATCACGGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 10
gtaagaagttt-tctctggaacgtcttttccaggttaatataaaaaatcaaatcctgactgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
||||| | | | |  |    |  |  | |  ||  |  |  | |    ||| |    ||  ||||   | ||||||||| | || ||||| |||||||| ||||||||    ||  |||| |||||| |||||||||||||| |||| ||||| |||||||||||||| ||||| |
gtaagtattctgttccctatatataatatgtagagtggttaagacctacaattataaaccatttatgtgtttgcagATAATTTTGGCTGTTGGAACAAAACTTCAAGCCACACTGGCAAACATGGCTATTGAAATCACAGAACGACACGCAGTTGTCCAAGGGATTCCTCTTGTTC

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G17480.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagaagttttctctggaa--cgtc----ttttccaggt--taatat----aaaaaatcaaa--tcctgac----------tgtttaaccggttgca-gATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
|||||   | ||    | ||  |||     | |||||  |  ||||||    ||  | ||| |  |  ||||          |||||    | || || |||  | || ||||| || ||||||||||||||  || | |||| |||||||||||  |||||||| |||||||| || || ||||| || |||||||| |
gtaagttatctttcacgtaattcgttgaaatcttccaaataataatatctttaaggactcacagtttttgacaaactagttttgtttttttgttttcaagATCATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATGACAAGGATGGCTCTTGGTATCACAGATAGACATGCGGTAGTTCAAGGAATGCCGCTTGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     GATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTG                         ATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCT
genomic: GATGGCAGGCAATGTTTTGGGCATCCATAATTCCCTTAGTGgtaagaagtt ... ccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcttttccaggttaatataaaaaatcaaatcctgactgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGC
          aggttaatataaaaaa  TA-rich tract