Sequence
atgc intronic sequence ATGC exonic sequence...tggttactttcttcactgaggtggatattaagtgatgtgatacttattcatgtgctttaaattatattcctttacgtcatttctggctgatgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 9
tggttactttcttcactgaggtggatattaagtgatgtgatacttattcatgtgctttaaattatattcctttacg--tcatttctggctg-atgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC--------------------
||| | | ||| ||| | || | || | |||| || | ||| || | | || | | || || || | |||| | |||||||||| |||||||||||||| |||||||||||||| ||||||||| | || || |||| || | |||||||||
-------------------------tataaggctttgtagattttaataatttactatct-ttatgttgttccacgcttccaccataattatatagtttggtgatggttatttggtctatgtg-cagGGGCTTTACAAGATGTTCTCCACTTGCATGATGTTCTCGCTAGAGTTTCTCTAGCGAGGTTATGTTGTACAATATCAAGGGCTAGAGCTTTAGATG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 9
tggttactttcttcactgaggtggatattaagtgatgtgatacttattcatgtgctttaaattatattcctttacg--tcatttctggctg-atgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC--------------------
||| | | | || ||| | | ||| | |||| || | || || | | || | | || || || | |||| | |||||||||| |||||||||||||||||||| |||||||| ||||||||| | || || ||| || | |||||||||
-------------------------tataaggctttttggattttaataacttgccatct-ttatgttgttccacacttccaccataattatatagtttggtgatggttatttggtctatgtg-cagGGGCTTTACAAGATGTTCTCCATTTGCACGATGTTCTCGCTAGAGTTTCTCTAGCGAAGTTATGTTGTACAATATCAAGGGCTAGAGCTTTAGATG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G07360.2 (Arabidopsis thaliana), 3'ss of exon 10
----------tggttactttcttcactgaggtggatatta-----agtgatgtgatacttattcatgtgctttaaattatattcctttacgtcatttctggctgatgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC--------------------
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gtatgctcaccaggccttttatctcttgacgttaatctttttgctggttatttcgtgtttatttgtgctaattataaagaagtgtttggaacacgatctgggtta-gctgatatacctttcttctgtacaccaaattagGGGCTTTGCAAGATATCCTGCATATGAATGATGTTCTTGCTAGAGTTTCTCTGGCTAGGTTGTGCCACTCAATATCTAGAGCTCGGGCATTAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcatgtgctttaaattatattcctttacgtcatttctggctgatgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC
ggctgat putative branch site (score: 4)
tgtcctc CT-rich tract
tttaaattatattcct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggttactttcttcactgaggtggatattaagtgatgtgatacttattcatgtgctttaaattatattcctttacgtcatttctggctgatgtcctcaagTTGCTTGGGTGTTTTATGAGTCAGGGGCTTTGCAAGATGTTCTCCATTTGCATGATGTTCTTGCTAGAGTTGCACTTGCCCGGTTGTGCTATACAATATC
- - - - -tcttcac
- - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg