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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatacctttttcttttcttttttttccctttattgtttcttatatcattgggaaagctgatttttcaattgaaacagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA

Basic information

species Vitis vinifera
transcript Vv07s0031g02060.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM5G840940_T01 (Zea mays), 3'ss of exon 1
gtatgtatacctt--tttcttttcttttttttccctttattgtttcttatatcattgggaaag-----ctgatttttcaattgaa----acagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
||||||||  | |   ||| ||     ||| ||         ||    |||  |||  |||       |||  || || | |        ||||||||||||| |||  | ||||| || |||||||| ||||||||||| || |||||||| |||||||| || ||  | |||||||||||||| ||     
gtatgtatggcatgaattcattctaactttatctgaaagacattgaagatagtattctgaacaagtttctgcattatctacttctctttgcagATTAACATGAAAGGTCTTGATGGGATCCAAGGACCAATATATGTTGGGACTGGTTGTGTTTTCAGAAGACATGCTTTGTATGGTTATGATGCCCCAACTG

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 10
-----gtatgtatacctttttcttttcttttttttccctttattgtt---tcttatatcattgggaaagctgatttttcaattgaaa-cagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
      | | | | ||| ||| ||| ||| |||  |   || |  ||   || | ||  || |  |   || | |   ||||||||| ||||||||||||| ||| || ||||| |||||||| || |||||||| ||||| || ||||| ||||||||| | ||||||||||| |||||||| |||| ||
gtaagttttctcttcctctttttttgcttgtttgactgcttttctttcagtcctttaatatggcaactactaactccccaattgaaaacagATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACTGGATGTGTTTTCAGAAGGTACGCACTTTATGGATATGATGCACCTGCCA

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 10
gtatgtatacct------ttttcttttcttttttttccctttattgtttcttatatcattgggaaagct---gatttttcaattgaaa-cagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
||| || | |        |||||||| ||| |||  |   || |  |||  |   | | |  |  ||||    | |   ||||||||| ||||||||||||| ||| || ||||| |||||||| || |||||||| ||||| || ||||| ||||||||| | ||||||||||| |||||||| |||| ||
gtaagttttctcttccaattttctttgcttgtttgactgcttttcttttggttctttagtatggcagcttctaactccccaattgaaaacagATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACGGGATGTGTTTTCAGAAGGTACGCACTTTATGGATATGATGCACCTGCCA

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtatacctttttcttttcttttttttccctttattgtttcttata---tcattgggaaagctgatttttcaattg-aaacagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
|||||  | || |    |||   |||   |   | |||| | | ||| |    | ||   |  | ||  | |   |||  |||||||| ||||||| ||| |||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | |||||| ||    |
gtatgatttccatggaatttgtctttgcgttgttctatt-tatgttacagctcccttctcattggtgtctctatgattataaacagATCAACATGAAAGGTTTAGATGGCATACAAGGACCGATATATGTGGGGACCGGGTGTGTCTTCAGAAGGCAAGCACTTTATGGATTTGATGCACCAAAGA

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtatacctttttcttttcttttttttccctttat---------tgtttcttatatcattgggaaagctgatttttcaattgaaacagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
|||||| | | | | ||||||  ||| ||||  |||||           |||| | | |  |      |  |  ||||    | ||||||||||||||||| |||  | ||||| |||||||||||||||||||| || || |||||||| || ||||| || || |||||||||| |||||| ||    |
gtatgtgtccttatctcttttgctttgtttctgtttatgttttagtgcttttcctcttttctcatttgatattgttttggtgtggaaacagATTAACATGAAAGGTCTTGATGGGATACAAGGACCGATATATGTCGGGACAGGTTGTGTGTTTAGAAGACAGGCTCTTTATGGTTTTGATGCACCAAAGA

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtatacctttttcttttctt---ttttttccctttattgtt--tcttatatcattgggaaag---ctgatttttcaattg---aaacagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
||| ||| ||| || ||| |       |  ||| | |   || ||  |||  | | | |    ||     |||| || ||||||   ||||||||||| |||| ||| || |||||  ||||||| || ||||| || |||||||| ||||| || || || |||||||||||||| | |||||| ||    |
gtaagtacaccattctctatcaccacatccttttcttgagttattcatctgctcttacttaccaaatttttgatcttgcaattgtcgaaacagATTAATATGAAAGGTTTGGATGGATTACAAGGGCCTATATACGTGGGAACCGGGTGTGTTTTTAGGAGACAAGCACTTTATGGATTTGATGCGCCAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccctttattgtttcttatatcattgggaaagctgatttttcaattgaaacagATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCA
                                agctgat  putative branch site (score: 4)
      tttattgtttcttata  TA-rich tract