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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgatattttttaccttagcacatatgtttctgcttttgtttgttcatttgtgttattagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 10
gtctgatattttttaccttagcacatat-----gtttctgcttttgtttgttc----atttgtgttattagcatataaa---aaaatcagcatg----ta-actcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
|| | ||  |  ||| |  |||| ||||     ||||   | ||||| | ||     |||    ||||||   |||| |   | | |    |||    ||  ||  ||||| |||||  ||  | |||| |||||||| | || ||| |||| ||||||||| ||||||||||||| |||||||| || || | ||||||| ||||||||||||| || ||||| ||||
gtataattctagttaacaaagcaaatattctgtgttttaacatttgtattttacctaattgacattattattgtatacagctagacttgtgatggttttatgcttgtttttctttttgattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTGCGGCACAGACCAATTG

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 10
gtctgatattttttaccttagcacatatgtttctgcttttgtttgt-tcatttgtgttattagcat----ataaaaaaatcagcatgtaa----------ctcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
|| || |  |  ||| |  |||| |||| | | || ||     | | || ||| | | |||  |||     || | |      | ||| |          ||  ||||| ||| |  ||  | |||| |||||||| | || ||| |||| ||||||||| ||||||||||||| |||||||| || || | ||||||| |||||||||| || || ||||| ||||
gtatggttctagttaaca-agcagatat-tctgtgtttaaacgtatgtcctttatctaattgacattattgtatatagccagacttgtgatggttttatgcttgtttttctttattattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTG

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G32070.1 (Glycine max), 3'ss of exon 10
gtctgatatttt-ttaccttagcacatatgtttctgcttttgtttgttcatttgtgttattagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
||   || | |  |||   | | ||  |    | | ||  |  || || || ||| | | ||     | | |  ||||  || | |||  |                ||| ||||||||||||||||  || |||| || || ||||||||||||||||| |||||||| || || ||||| | ||| |||||| |||| ||  |||||||||
gtacaatttctagttattcttgaactaaacactatactggttgttctttatgtgtttcaatatgtattgacattatcattatatgactgata--------------attatagGTTACTGCAATAGTGGCAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCTAGAAGATCAAACATGCGACACCGACCCATTG

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 12
gtctgatatttt-ttaccttagcacatatgtttctgcttttgtttgttcatttgtgttattagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
||  ||| | |  |||   | | || ||     ||    | | |  |   |  ||||| | |  || ||   | || | |||           | | |      |  ||  ||||||||||||| || ||| |||| || || ||||||||||||||||| |||||||| || || ||||||     |  |    |   | ||  ||   || 
gtacgatttctagttattattgaac-tacaca-ctatactagatgttctttacgtgtt-tcaatatgtattgacattatcat-----------tatatgactgataattgtagGTTACTGCAATGGTGACAACAAACCTCAATAAAATAATTGATGTTAATTACTACCCAGTTGATACTGCATTTGTGGAACTGCTTTTTGATCTACAATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagcatataaaaaaatcagcatgtaactcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
                      atgtaac  putative branch site (score: 3)
                       tgtaactctttttttt  CT-rich tract
                         taactctttttttttt  TA-rich tract