1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcacaactcctccacctctcattttgttagcaacacgattatgtggttacctagaactctgatttgcaagtgaacatttatgaacttgttccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAAAAATCGACAGGCCAATGGGAGTCGTCTGTTTCCAGACGGCAAAGGACA
species | Vitis vinifera |
transcript | Vv07s0031g01970.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110364122|gb|EC927769.1|EC927769
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110416190|gb|EC982152.1|EC982152
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: GCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110381624|gb|EC934958.1|EC934958
genomic: GCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CGAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCAGAT--GGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110387763|gb|EC952457.1|EC952457
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CGAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCAGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|351012778|gb|FQ430341.1|FQ430341
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110684729|gb|EE062340.1|EE062340
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CGAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCAGATATGGTCGTGTCCAAGTCACTGGTTGCAEST: gi|110387558|gb|EC952238.1|EC952238
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
EST: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAG GAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
genomic: CAAGGATAACGTTAAAGAGACTTGCAGAGCTGTTGTGTCTTAGCGTCCAGgtttgcttaa ... tccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCA
ggttacctagaactctgatttgcaagtgaacatttatgaacttgttccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAAAAATCGACAGGCCAATGGGAGTCGTCTGTTTCCAGACGGCAAAGGACA
ctctgat putative branch site (score: 4)
ttccatctc putative PPT
aacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacaactcctccacctctcattttgttagcaacacgattatgtggttacctagaactctgatttgcaagtgaacatttatgaacttgttccatctcagGAAGCCGAGAAGCATCTCTCGGATATGGTCGTGTCCAAGTCACTGGTTGCAAAAATCGACAGGCCAATGGGAGTCGTCTGTTTCCAGACGGCAAAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
ctcacaa
- - - - tcctcca
- - - - - - - -cctctca
- - - - - - - - - - - - - - - -caacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac