Sequence
atgc intronic sequence ATGC exonic sequence...ggtttaactggtctactttgcctattataaatgaaaaatcattgcagctcctttggatgattgcatattatggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G149802_T02 (Zea mays), 3'ss of exon 11
-------ggtttaactggtctactttgcctattataaatgaaaaatcattgcagctcctttggatgattgcatattatggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
|| || || | ||| || | | | | | | | || || | | | | || | | || | || ||||||||||||| |||||||||||| | || |||| || |||||||||||||||||||| || || || || | | || || || |||||||| |
gtaatttcattcaaacaaaatattgtgctgcttttctctaacagaatgtcttctatttttctcataagttatgaaactaattgcaaaattgtggc--actcacctagGTTGAATATGGTGAGACAGATGCATGGCTTTCTTTGGAGCTCATGTTTCATTTGAGTGTTCTCCCACTGACACGACAATTAACCAACATTAGTGGTAACC
upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 12
ggtttaactggtctactttgcctattataaatgaaaaatcattgcagctcct--ttggatgat-tgcatatta--tggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
|| | |||||| | ||| ||| ||| || | | | || | | || ||| | || || || |||| | | || | | ||||||||||| |||||||||||||||||| | || |||||||| |||||| |||| ||||||||||| || || |||| ||||||||||| ||||| ||||
-----aaagactatacttttgccatttggaatatttgatcgatggaacatttaattagtttatctgcttttttgctgattgtcatagtgttcttgacttgtccagATTGAATACGGTGAAACAGATGCATGGCTGTCTATGGAACTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGCAATC
upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G67100.1 (Arabidopsis thaliana), 3'ss of exon 11
----ggtttaactggtctactttgcctattataaatgaaaaatcattgcagctcctttggatgattgcatattatggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
|| | | | | | | ||| ||| | | || | || ||| || | || | |||| || || || | ||||||||||||| |||||| || |||||||||||||||||||| || ||||||||| | |||||||||||||| |||| | || ||||| || ||||| ||||
taaagggattgcagataacagcagtcacttaaggttgatgagtgatgactgcatctt-aattgctcgcttgttataaccctt---tgattttcttttctttcagATTGAATGTGGTGAGACGGATGCATGGTTATCCATGGAGCTCATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agctcctttggatgattgcatattatggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
gtttaat putative branch site (score: 4)
tatgtttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtttaactggtctactttgcctattataaatgaaaaatcattgcagctcctttggatgattgcatattatggttctcatcctatgtttaatggtttcagATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATC
- - - - - - - - - tgcctat
- - - - - - - - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - cagctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc