Sequence
atgc intronic sequence ATGC exonic sequence...ggtgtttatagtattcttaagattattaaatgcagttatttctaaactgcatagtgtgtgtgtttttgtagcttatttattggcatgataattattgcagAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G46710.1 (Glycine max), 3'ss of exon 12
---------------------------------------------------------------------------ggtgtttatagtattcttaagattattaaatgcagttatttctaaactgcatagtgtgtgtgtttttgtagcttatttat--tggcatgat---aattattgc---agAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
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gtaaatttatgcttgtatatgctctaattttactagcttactttcctggatggtttaatgcttcatgactagcgctgaacttttattggtttgaagatacttt--tgctgtgacttgtgatccttgttcttttatctcttatgtcttatacttttgatgacactatttcggtttccgcctcagAAAACTGGTAGTAGCATTCAAGAGGAAGTTGAAACATCTATGTATGATGCTGCAGCAG------------------------------------------
upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G36660.1 (Glycine max), 3'ss of exon 9
---------------------------------------------------------------------ggtgtttatagtattcttaagattattaaatgcagttatttctaaactgcatagtgtgtgtgt-ttttgtagctta----tttattggcatgataattattgcagAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
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gtaaatttatgctcgtatatgctctaattttactaccttacattcctggatggtttaatgctccatgactgcttcttaagttttattggtttgaagatactttggtgtgacgtgtgagccttgttcttttatcttttatgtcttacacttttgatggcactgtttccccctcagAAAACTGGTAGTAGCATTCAAGAGGAAGTTGAAACATCTATGTATGATGCTGCAACAG------------------------------------------
upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA16G14060.1 (Glycine max), 3'ss of exon 11
ggtgtttatagtattcttaagattat-taaatgcagttatttctaaactgcatagtgtgtgtgtttttgtagcttatttat-tggcatgata-attattgcagAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
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-gtttccggaataatgtttttatcttattagtttaaatatttatgtaa-acatattatttttttaatt-taacttattgaaacaatagaatatattttttcagAAAACTGGGAGTAGCATTCAAGAGGAAGTTGCAACATCTGTGTATGATACTGCAGCAG------------------------------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgcatagtgtgtgtgtttttgtagcttatttattggcatgataattattgcagAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
atgataattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtgtttatagtattcttaagattattaaatgcagttatttctaaactgcatagtgtgtgtgtttttgtagcttatttattggcatgataattattgcagAAAACTGGTAGTAGCATGCAAGAGGAAGTTGAAACATCTATGTATGATCCTGTAGCAGGTATTGCTGGAGGCTGTTGTGATTTATTTCTATCTTGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - aatgcag
- - - - - - - - - - - - - - - - - - - - - - - -tgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat