Sequence
atgc intronic sequence ATGC exonic sequence...aatatgttaagagtctaaacttccatctgatgctattttttgttactgtttttttcttctttttccacattttctcatttcagttctctttattatgtagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G088245_T01 (Zea mays), 3'ss of exon 10
------------aatatgttaagagtct---aaacttccatctgatgctattttttgttactgtttttttcttctttttccacattttctcatttcagttctctttattatgtagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
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gtactaacacataataccttattaacttgtcagacttgtttacattttttctgcttttgaactgtctttaaatcttattctg--tttttgtgtgtgtgtgtgttttgaactccagATGCTTTCTTCAAAGGACCTGAACTTTGTGGGCTATACCTACAAGAACTTTGAACTTGTGAACGATCACGATGTCCCCGGCATGG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 10
aatatgttaagagtctaaacttccatctgatgctattttttgttactgtt-tttttcttctttttccacattttctcatttcagttctctttattatgtagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
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-ctgtcttctaattctctaccttcaaatcttcgatatcttaatttcagttgttcttttcctttatcttagtattcttttgttgtttgtcgagatgttacagATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 10
aatatgttaagagtctaaacttccatctgatgctattttttgttactgtttttttcttctttttccacattttctcatttcagttctctttat-tatg----tagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
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-----attcttgatcttcatgtttatagttagttaattcttaatggtttcttatgtttctttcttttcattcttatatggtggtttgtttaatgtgtggttacagATGATTTCTTCTAAAGACTTTAATTTTGTCGGATACACATACAAGAACTTTGAAATTGTCAATGACTATCAAGTTCCTGGAATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtttttttcttctttttccacattttctcatttcagttctctttattatgtagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
tttcttctttttccac CT-rich tract
tttttcttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatatgttaagagtctaaacttccatctgatgctattttttgttactgtttttttcttctttttccacattttctcatttcagttctctttattatgtagATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - ccatctg