Sequence
atgc intronic sequence ATGC exonic sequence...catccttgaaatctgacattcattgtcttgcatctttgtgcatgtgtgttatatggtttctgaacaatgaaactgctgaatttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G04300.1 (Glycine max), 3'ss of exon 16
-------catccttgaaatctgacattcattgtcttgcatctttgtgcatgtgtgttatatggtttctgaacaatgaaactgctgaatttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG
|| ||| |||| || |||| | | | ||| ||| | |||| ||| || || |||||| || || |||||| | | || ||||| || |||| ||||| ||||||||||| ||||| || |||||||| || ||||| ||||||||||| ||| |||| |||||
tgggagttttctttgccgtctg---ttttggaccttgt-tttggaaagaaactcgttgtatcttatctgtcttctgatgaagccaaa---gtttgtgttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCACTGGGTGGAACA
upper sequence: Vv07s0005g03440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G18470.1 (Glycine max), 3'ss of exon 16
-------catccttgaaatctgacattcattgtcttgcatctttgtgcatgtgtgttatatggtttctgaacaatgaaactgctgaatttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG
|| ||| |||| || |||| | | | || |||| ||| | |||| | ||| || || |||||| || || |||||| | | || ||||| || || | ||||| ||||||||||| ||||| || |||||||| || ||||| |||||||| || ||| |||| |||||
tgggagttttctttgccgtctg---ttttggagcttgt-tttgaatagataattgttgtatcttatctgtcctctgaggaagccaaa---gtttgtgttggatgcagGTACCACTTGTTCATGGATGCTTTCACCCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACGCATCCACTGGGTGGAACA
upper sequence: Vv07s0005g03440.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA10G04300.2 (Glycine max), 3'ss of exon 17
----catccttgaaatctgacattcattgtcttgcatctttgtgcat-----gtgtgttatatggtttctgaacaatgaaactgctga--atttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG--------
|| | |||| | | | | | | | ||| | ||| | | | || ||| |||| || || || |||| | | || ||| | ||| || | | | || |||| || || | | | || | | ||| ||||| |
gtaatatagataaaatttacaaacaacttacaaagagcaacacacatccactgggtggaacagcatacctaaacttggaaaatgacgatgatccatttctacatggcatcaa-atacactgct-atgcccccaacaaagCGCTTCC---GTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttatatggtttctgaacaatgaaactgctgaatttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG
tgaatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catccttgaaatctgacattcattgtcttgcatctttgtgcatgtgtgttatatggtttctgaacaatgaaactgctgaatttatttgtggtgaatacagGTATGAACTCTTTATGGAAGCATTTAGTCATATTTCTGGTAATATTGATAAGATCTACAAACAGCTAACAAAAAGCAACACACACCCATTGGGCGGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
catcctt
- - - - - - ctgacat
- - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg