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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctggtttcttttgttttagaatgatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG

Basic information

species Vitis vinifera
transcript Vv06s0009g03750.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G010342_T01 (Zea mays), 3'ss of exon 9
gtatgctggtttcttttgttttagaatgatca-gtttaaactaaaaaaatgtactttaaatataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
       ||| |  | |   | | | |||  |  ||| || | | || |  ||  |  |  | |  || | ||| ||      | |  | ||     | |  ||  |   |||| |||||||||||||||||||||||  | ||||||||||||||||| || |||||| | || || ||||| |||||||| ||  | || 
-------ggtctagtat-cctcatattgaatatatttcaattcataacacatatatgcacaacagaatacaaatattt---cgttttttgattg---tttgattggtgacacagGTGGAGAAATGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGGAAAACTATCCAATCTGTTTCCATGCTTGGCTTCCTTCAT

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 10
gtatgctggtttcttttgttttagaatgatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
                    |  | | ||||| | | | ||  | | ||| ||   | |      || | |||  |    | | | || ||     | |   |  ||  |||| |||||||| ||||||||||||||  | ||||||||||||||||| || |||||| | || || || || |||||||| ||  | || 
-------------------gtacgtaagatcaatatgatctgcatatatgcacagcaga------atgcaaatactc---tgttttctgattg---tttgactggtaacacagGTGGAGAAACGATACTAATGTTATACTTGCTGATGAAATGGGTCTGGGAAAAACTATCCAATCTGTATCCATGCTTGGCTTCCTTCAT

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 10
gtatgctggtttcttttgttttagaatgatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
                                   ||  | |      | || ||   |    || || |||||||    | | |   |||| |  | | || |||    |||||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||||||| |||||||| || |||||||| ||| |||||
----------------------------------gtatgc-atggttgtatatttgtcaaggtatgttttaattttttggtgt-tctaaatctg--tgtattgcattttgcagCTGGAGAAATGATACAAATGTCATTTTAGCCGATGAAATGGGCCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTGCAG

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 10
gtatgctggtttcttttgttttagaatgatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcata-tatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
                                               ||| |  |    |||| |  || |  |  |   || | |  |  |   ||     |   ||   ||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||| ||| | |||
---------------------------------------------gtatgcatatctg-tatatttgtcaaggtacattttaattttttggtgttctaaatctgtgtatggcagTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAG

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatgctggtttcttttgttttagaat----gatcagtttaaactaaaaaaatgtactttaaatataatattctaattttagcat--atatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
   || |   || | |   || | |||    ||| | | |  |||     | |     |||  | | ||  | || || | |  |   | || | ||  ||||| |||||||    |||||||   |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
--gtgtta-cttatctcacttcacaattgctgatgattatttacttgtctactcggtctta--tgtgattctttacttgtcggctcggtctaatgattggcttc-ctttcattttccagCTGGCTTAATGATACTAATGTCATTTTGGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGGTTTTTGCAG

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 3'ss of exon 11
gtatgctggtttcttttgttttagaatgat-cagtttaaactaaaaaaatgtactttaaatataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
             | | |||    ||| ||   ||||| |     |   || |   ||  | | |||||   || |||      |   |   | | | ||          | || |||||||| || || ||||||||| | || |||||||||||||||||||| || || |||||||| || |||||||| ||| | |||
---------gaggtatcgttgcgcaatcatgtcgtttagagattgagtgtgga---taggtctgatatt--gatattatttcgaaccttttgctgttgcttgggttggttatagTTGGAGAAACGACACCAATGTTATTCTTGCGGATGAAATGGGTCTTGGCAAGACGGTTCAGTCAGTGTCGATGCTTGGATTTCTTCAG

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 3'ss of exon 11
-------------------------------------------------------------gtatgctggtttcttttgttttag-aatgatcagtttaaactaaaaaaatgtactttaaatataatat-tctaattttagcatatatactaatcagcttct-ctttcata-----gaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
                                                             ||  |  | |     | ||  | | | | |  |||      |        ||   | |  ||   ||  |||  |||| | || | |||| | |   |  | || | ||      |||||| ||||| || || || ||||||||  | || |||||||||||||||||||| || || |||||||| || |||||||| |||||||||
gtatgcaccaaattgcagcgattttgtcaacgtcacagtggcatattcactgaggacaaatgttagtggatagaaatagtggtggcagtaacgagtcactgatgtcgccgagtgggtgagttaaggtaagtctggttttggtat-tctactgagcccttgttgctgttatgtgggtgaacagTTGGAGGAACGACACCAATGTTATCCTTGCAGATGAAATGGGTCTTGGCAAGACAGTTCAGTCAGTCTCGATGCTTGGATTTTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatattctaattttagcatatatactaatcagcttctctttcatagaacagCTGGAGAAATGATACTAATGTTATTTTGGCTGATGAAATGGGTCTTGGCAAAACTGTGCAGTCAGTTTCTATGCTTGGGTTTTTGCAG
                          tactaat  putative branch site (score: 1)
                                tcagcttctctttc  CT-rich tract
     atattctaattttagc  TA-rich tract