Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG

Basic information

species Vitis vinifera
transcript Vv06s0009g02790.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA02G44690.1 (Glycine max), 3'ss of exon 10
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaac-tctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
||||| || |   ||||   | |    ||| |   |||   || |     |  |||| | ||    |   ||| |  || ||  |    ||| |      | ||||||| |  ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||
gtaagatgtc--aatttccagcttagcactcccttactttcaggttggggtaaaatggtgaa----caggataac-cttattgctagaacttatggtttatatatttatgtcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGATAACAAGCACTGAATG

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G04030.1 (Glycine max), 3'ss of exon 10
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
||||| || |   | ||   | |     || |    ||    | | |  | ||   | |||| |    ||   |      ||||  ||    || |   | ||| |||||  ||||| ||||||||||| || |||||||| |||||| |||||||||||||||||||
gtaagatgtc--aacttccagcttagccctcc----ctttctgtttaggtcgg---ggtaaaatggtgaagagggtaaccttttagctagaacttatggtttatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCAGGATAACAAGCACTGAATG

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G06100.1 (Glycine max), 3'ss of exon 10
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
          |    |  |   |  | |    |  | |        | ||||| ||||  |||     | |    |   ||||    ||  | |  |  |  || |||||  ||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||||
---------gtaagataatcagttatcagcctagcattccatttcaagattgggatga--aatggaggagaggataacattttaacttgaattt--attttgatatatctcacagGAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagttgcctggatttgttgttcgttacttcaaaactaatagctcaaattggaatgataaattccctaaatagcattttttttttctgcttctcaaactctat-ttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
                                        ||  |     |||||| ||||||||        | |      ||||   | | |    || ||| |  |  ||||||||||||||||| ||||||  ||||||||||| || ||||| |||||||| ||
---------------------------------------gtaagtacttgtggaataataaattcttctttctgtacagaagttttaatcgtttt---ctgtatatcctaatccagGAGTCTGGCCAACTCTCAGCTACTGATTATGTTCGAATAACCAGCACTGAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137635|gb|CB922973.1|CB922973
EST:     GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTG                         GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
genomic: GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTGgtaagttgcc ... tatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
EST: gi|27582296|gb|CB004991.1|CB004991
EST:     CTGGTTTGGGACACAATGGTG                         GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
genomic: CTGGTTTGGGACACAATGGTGgtaagttgcc ... tatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
EST: gi|30131395|gb|CB916734.1|CB916734
EST:     GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTG                         GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
genomic: GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTGgtaagttgcc ... tatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAA
EST: gi|30295952|gb|CB972746.1|CB972746
EST:     GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTG                         GAGTCTGGCCAAATCTCAGTCACCTGATTATGTCCGGATAACAAGCACTGA
genomic: GTATTGAGGAGAGGATGCATCTGGTTTGGGACACAATGGTGgtaagttgcc ... tatcttccagGAGTCTGGCCAAATCTCAGTCAC-TGATTATGTCCGGATAACAAGCACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattccctaaatagcattttttttttctgcttctcaaactctatttatcttccagGAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATG
    ccctaaa  putative branch site (score: 3)
                                      ctctatttatcttcc  putative PPT
       taaatagcattttttt  TA-rich tract