Sequence
atgc intronic sequence ATGC exonic sequence...gagtaaacatctgtttgttgcagaacctataaatatggtacctgttttatgctaatatgtgtttcattgtgctaatttctttcttcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G15470.1 (Glycine max), 3'ss of exon 10
-------------------------------------------------------gagtaaacatctgtttgttgcagaacctataaatatggt--acctgttttatgctaatatgtgtttcattgtgctaatttctttcttcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
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gtttgactgctaattgcattttttgtttttttctgcatccattattgttgtctttatgtagctttcttttcttctttcattcaagggtatttatcaagacatgtaaaattagtgcccttttatatgtacagtttctgatgttcatcttttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07980.1 (Glycine max), 3'ss of exon 10
-------------------------------------------------------------gagtaaacatctgtttgttgcagaacctataaatatgg---tacctgttttatgctaatatgtgtttcattgtgctaatttctttct------tcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
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gtttgactgctaaagtttcatttttttttttgttttttctgcatccactattgttctgtctttatgtgc-tttatttcttctttaattcaagggtatttatctagccatgcaaaattagtggccttttatatgtacagtttcctatgtgcgttgtttttttttttggcagTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCT
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT3G46220.3 (Arabidopsis thaliana), 3'ss of exon 9
------------------gagtaaacatctgtttgttgcagaacctataaatatggtac--ctgttttatgctaatat------gtgtttcattgtg--ctaatttctttcttcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
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gttgacaccaactgcttcaactatagttgtatctttcgcttgac-taccaatgtctttccactgtttaccactagcaccatcacatagtattttgtgaccttatttttcttggatttccttttggcagTCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCTTTTCGAAGATGACCAATCAACTGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709009|gb|FC058795.1|FC058795EST: CGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAG TCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGAT
genomic: CGGAGAGAATGAAGCGTGTGCTTGATAATTTACAGAAGAAACTTGATGAGgttagcacag ... ccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatgctaatatgtgtttcattgtgctaatttctttcttcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
tgctaat putative branch site (score: 2)
tttcattgtgctaatt CT-rich tract
taatttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagtaaacatctgtttgttgcagaacctataaatatggtacctgttttatgctaatatgtgtttcattgtgctaatttctttcttcttccccctctccagTCTTTCTTAAATATGCAGCTCTATGTAAAAGCACTAGATTTGTTTGAAGATGACCAATCAACCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-agtaaac
- - - - - ctgtttg
- - - - - - - - - - cagaacc
- - - - - - - - - - - - - - ataaata
- - - - - - - - - - - - - - - - - - - tacctgt