Sequence
atgc intronic sequence ATGC exonic sequencegtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 3'ss of exon 10
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
| ||| || | || | | || | | |||| | || | | ||| | || | | | |||| |||| ||||| ||||||||| | |||||||| || || || || |||||||||||||| ||||||||||| ||||| |||||| ||||||| || |
---gtataaattgctcttcattacactg-cacccgctacatgaaaatgttacctca-tattggtcccttgctctttgtatttaatcacagGCTAGGATTATGCCCTGGAGAACACTAAGGTTTAACGAGTCTGTCTGTAACCCATATAATGCTGATTTTGATGGCGATGAGATGAATTTGCATGTTCCTC
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G080176_T01 (Zea mays), 3'ss of exon 10
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
|| | || | | | || | | |||| | | ||| | ||| || || ||| | || | | |||| || |||| |||||||||| ||||||||| | || |||||||| || ||||||||||| || ||||| |||||||| || |||||||||||| |||||||||| |
----gtatcaatgtctccttattt-cataaaagtat-acatcaag--catttcttcacctttgaatatttgcttttatacttgagcacagGCAAGGATAATGCCATGGAGAACACTCAGATTTAATGAGTCTGTTTGCAACCCTTACAATGCTGATTTTGACGGAGATGAAATGAATTTGCATGTCCCTC
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
| | |||| ||| | || ||| || |||| || | || || | ||| ||| | ||| | | ||||| | ||||||||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||| || ||||
---gtcagtactggtttataatgct----tagtcataattttctcttgccctcatagcaatc--ctaattttacatatgttgtcccatagGCAAGAATAATGCCTTGGAGAACGTTGAGGTTCAACGAATCGGTTTGTAACCCATATAATGCTGATTTTGATGGTGATGAGATGAACATGCACGTACCAC
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S26_192V6.1 (Physcomitrella patens), 3'ss of exon 10
-------------------------------------------gtgattaaaactgattttaagtgtacaaatag-gtatcat-ttgaagttctttttttaacatttaattaagttttcttatttatgca---------tgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
| ||| || | || || | || | | ||| | || | | ||||| | | | | || | || | | | |||| | || ||||| ||| | || | | ||||| || || ||||| ||||| |||||||| || || || ||||||||||||||| ||||||| || |
gtaagatccttattcttttagattacatgataattttaaccttctttggaaatatgctgctagatggatcaacattgcatcgtactggatgtatttttgtccttcctgccttgttatttctgttaacaccggcttttattacagGCAAGAATTATGCCATGGCGTACGCTTCGATTTAACGAGTCCGTTTGTAACCCGTATAATGCTGACTTCGACGGTGATGAAATGAATCTGCATGTTCCTC
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ13293 (Selaginella moellendorffii), 3'ss of exon 10
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
| || |||| | ||| ||| || |||| |||| || |||| || | ||||| ||| | || || ||||| || ||||| |||||||| || || || || ||||| ||||| |||||||||||||||||||| || |
-------------------------------------gtatgtagtttctaattttgttttttcttccgttt-----gacatgcttgaagGCTCGAGTTATGCCCTGGCGTACTTTAAGGTTCAACGAATCCGTTTGCAATCCCTACAACGCCGATTTCGATGGAGATGAAATGAATATGCATGTTCCTC
upper sequence: Vv06s0004g03740.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ24638 (Selaginella moellendorffii), 3'ss of exon 10
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
| | |||| ||| || ||| | || || ||| || |||| || | ||||| ||| | || || ||||| || ||||| |||||||| || || || || ||||| ||||| |||||||||||||||||||| || |
-------------------------------------gtacgtagttttttacttt-tgttttttcttcttacgtttgacatgtttgaagGCTCGAGTTATGCCCTGGCGTACTTTAAGGTTCAACGAATCCGTTTGCAATCCCTACAACGCCGATTTCGATGGAGATGAAATGAATATGCATGTTCCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
aagttctttttttaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattaaaactgattttaagtgtacaaataggtatcatttgaagttctttttttaacatttaattaagttttcttatttatgcatgtagGCGCGGATAATGCCTTGGAGAACATTGAGGTTTAATGAATCAGTTTGCAACCCATATAATGCAGATTTTGATGGTGATGAAATGAATATGCATGTCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT