Sequence
atgc intronic sequence ATGC exonic sequence...cgatacttgtgttttacatattctactctcctctcttttactttactataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07590.1 (Glycine max), 3'ss of exon 11
----------------cgatacttgtg--ttttaca--tattctactctc-----ctctcttttactttactataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
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gtaagtttgttgtcatatacagttatgaattgtacaactatttaaaattgtgagacactagttca-tttactatttgtatttgttttattcactttcttatttgtatttctcct----ttgtcagATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTA
upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G15880.1 (Glycine max), 3'ss of exon 11
----------------cgatacttgtg--ttttaca--tattctactctcctctcttttactttactataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
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gtaagtttgttgtcatatacagttatgaattgtgcaactatttaaaattgagacaagttcatttactatttgtatttgttttattca-atttcttattgtatttctctt----ttgtcagATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGCGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGCA
upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G29270.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------------------------cgatacttgtgttt---tacatattctactctcctctcttttactttacta--taggtgatgaacatgcttacatt-tttaatt---ggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
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gtgagtttattgtcttctattgattatagcaattcagaaatttctgttatcgtattttctttggtttttttctaatatagatatttatgcttgagtgctagttttagtccgatcttttcagctgtgttaattaaatttcattcatattggttttattcaatttcttattttatttctcctttgtcagATCACGCCATATACAAAGGACGGAATTAACAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCA
upper sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40320.1 (Glycine max), 3'ss of exon 7
---------------------------------------------------------------------------------cgatacttgtgttt---tacatattctactctcctctcttttactttacta--taggtgatgaacatgcttacatt-tttaat---tggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
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gtgagtttattgtcttctattgattatagcaattcagaaatttctgtgatatcatttcctgtgcttttatttttctaatgtagatatttatgcctgagtgctagttttagtccgatcttttcagcagtgttaattaaatttcattcatattggttttactcaatttcttattttatttctcctttgtcagATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTGTAGGGGTCCGTATTGTTAAAAGGCTCAGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
atttttaattggtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgatacttgtgttttacatattctactctcctctcttttactttactataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTG
- - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg